Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0034 ATGGACCGGCGATCCCATCCCACGGGCACCGTCAGCACCCGGAACATCCTCTTCAACAAGTACGAGATTGGAAAATTGCTGGGACAGGGCAACTTCGCCAAGGTGTACCACGGCAGAAACCTCAGCACAAACGAGAGCGTGGCCATCAAAGTCATAAAAAAGGAAAGGCTCCAGAAAGAGAGGCTCGTGAAGCAGATCAAACGCGAGGTCTCCGTCATGCGCCTGGTGCGTCACCCCCACATCGTCGAATTAAAAGAGGTCATGGCCAACAAAGCCAAAATCTTCATGGTTGTCGAATACGTCAAGGGAGGGGAACTCTTCGCCAAGGTAGCAAAAGGGAAGATGAAGGAAGATGTCGCCAGAAAGTACTTTCAGCAACTCATCAGCGCCGTCGATTTCTGCCACAGCCGCGGCGTCACCCACCGCGATCTCAAGCCGGAGAATCTGCTCCTCGACGAGAACGAAGACCTTAAAGTCTCCGACTTTGGCCTGTCGGCGCTACCGGACCAGCGCAGATCCGACGGGATGCTCCTCACGCCGTGCGGCACGCCGGCCTACGTGGCGCCGGAGGTTCTCAAGAAGAAGGGCTACGATGGGTCGAAGGCTGATATATGGTCCTGCGGGGTCATCCTCTTTGCTCTTCTTTCTGGCTATTTGCCCTTTCAAGGTGAAAATGTGATGAGAATTTACAGCAAGTCTTTCAAAGCCGATTATGCATTCCCCGAATGGATTTCCCCTGCGGCCAAAAACTTGATCTCCAATTTACTCGTTGTGGACCCGCAAAAGAGGTATTCCATTCCAGACATCATGAAGGACCCTTGGTTTCAAATTGGTTTCTTGAGGCCCATTGCGTTTTCCATGAAGGAGTCTGCGCTTGAAGATAACATTGATTTCAGCGGGGATGATGTTCCTAGTCCTGGTAGTGATGATGGTAATAGCAGCAGCAACAACGAGGATGGGGAGTTGACGGGGGCTAAGCCTGCTCGTCCGTCTTACAACGCTTTTGAGATAATCTCGTCCTTGTCGCATGGGTTCGATCTGAGGAATTTGTTTGAGACGAGGAAGCGGTCGCCGTCAATGTTCATTTCCAAGTTTTCGGCTTCGGCGGTGATGGCGAAGCTGGAGGGGGTGGCCAAGAAGCTGAACTTTAGGGTGACGGGGAAGAAGGAGTTCATGGTGAGGATGCAGGGGGCGACGGAAGGGAGGAAGGGGAAGCTGGCCATGACGGTGGAGGTATTCGAGGTGGCGCCGGAGGTCGCGGTGGTCGAGTTCTCCAAGTCCGCCGGAGACACGCTTGAATACCTTAATTTCTGTGAGGACCAAGTCAGACCTTCGCTCAGGGATATTGTGTGGAGTTGGCAAGGGGACGCTAATTGCCACCAGTAA 1386 0.5332 MDRRSHPTGTVSTRNILFNKYEIGKLLGQGNFAKVYHGRNLSTNESVAIKVIKKERLQKERLVKQIKREVSVMRLVRHPHIVELKEVMANKAKIFMVVEYVKGGELFAKVAKGKMKEDVARKYFQQLISAVDFCHSRGVTHRDLKPENLLLDENEDLKVSDFGLSALPDQRRSDGMLLTPCGTPAYVAPEVLKKKGYDGSKADIWSCGVILFALLSGYLPFQGENVMRIYSKSFKADYAFPEWISPAAKNLISNLLVVDPQKRYSIPDIMKDPWFQIGFLRPIAFSMKESALEDNIDFSGDDVPSPGSDDGNSSSNNEDGELTGAKPARPSYNAFEIISSLSHGFDLRNLFETRKRSPSMFISKFSASAVMAKLEGVAKKLNFRVTGKKEFMVRMQGATEGRKGKLAMTVEVFEVAPEVAVVEFSKSAGDTLEYLNFCEDQVRPSLRDIVWSWQGDANCHQ* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0034 461 Pfam Protein kinase domain 21 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso15g0034 461 MobiDBLite consensus disorder prediction 306 321 - -
Gso15g0034 461 Coils Coil 49 69 - -
Gso15g0034 461 ProSiteProfiles Protein kinase domain profile. 21 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso15g0034 461 PANTHER - 12 460 - -
Gso15g0034 461 CDD CIPK_C 333 447 - -
Gso15g0034 461 Gene3D Kinase associated domain 1, KA1 328 452 - -
Gso15g0034 461 MobiDBLite consensus disorder prediction 298 328 - -
Gso15g0034 461 PANTHER CBL-INTERACTING PROTEIN KINASE 16 12 460 - -
Gso15g0034 461 ProSiteProfiles NAF domain profile. 327 352 IPR018451 GO:0007165
Gso15g0034 461 ProSitePatterns Protein kinases ATP-binding region signature. 27 54 IPR017441 GO:0005524
Gso15g0034 461 SMART serkin_6 21 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso15g0034 461 Pfam NAF domain 331 386 IPR004041 GO:0007165
Gso15g0034 461 SUPERFAMILY Protein kinase-like (PK-like) 17 276 IPR011009 -
Gso15g0034 461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Gso15g0034 461 Gene3D Transferase(Phosphotransferase) domain 1 12 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0034 Gso-Chr15 312442 314667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0034 16 456 CBL-interacting serine-threonine protein kinases AT5G25110 60.091 0.0 557
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gso15g0034 Pkinase 1.8e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0034 - - gmx:100804244 856.67