LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso15g0020	ATGGTGCAATCCAATCCACAAATTCTGCAGCCTGTACTTCAGGAACTTGGAAAGCAGAATCTTAGTCTCTCAAGACTTATTCAAGAGCATCATGGTGAATTTCTCCAGTTGATTAACGATCCTGTTGAGGGTTCTGAAGGTGATATATTTGATCAACCTGAGCAAGATATGCCTCATGCTATCAATGTGACGCCAGCGGAGCAGGTGGCAATTGGAAGGCTTGAGGCTATGGGATTTGATAGAGCCTCAGTCATCGAGGCATGTGACCGTGACGAGCAATTGGCAGCCAACTACTTACTGGAAAATGCTGGAGATTTTGAGGATTAA	327	0.4465	MVQSNPQILQPVLQELGKQNLSLSRLIQEHHGEFLQLINDPVEGSEGDIFDQPEQDMPHAINVTPAEQVAIGRLEAMGFDRASVIEACDRDEQLAANYLLENAGDFED*	109

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso15g0020	108	PANTHER	UBIQUITIN RECEPTOR RAD23A-RELATED	1	107	-	-
	Gso15g0020	108	SUPERFAMILY	UBA-like	46	105	IPR009060	GO:0005515
	Gso15g0020	108	PRINTS	DNA repair protein Rad23 signature	12	34	IPR004806	GO:0006289
	Gso15g0020	108	PRINTS	DNA repair protein Rad23 signature	61	77	IPR004806	GO:0006289
	Gso15g0020	108	PRINTS	DNA repair protein Rad23 signature	78	92	IPR004806	GO:0006289
	Gso15g0020	108	PANTHER	UV EXCISION REPAIR PROTEIN RAD23	1	107	-	-
	Gso15g0020	108	Pfam	UBA/TS-N domain	70	99	IPR015940	-
	Gso15g0020	108	Gene3D	-	1	43	IPR036353	GO:0003684\|GO:0006289\|GO:0043161
	Gso15g0020	108	Pfam	XPC-binding domain	1	41	IPR015360	GO:0003684\|GO:0006289\|GO:0043161
	Gso15g0020	108	Gene3D	-	58	103	-	-
	Gso15g0020	108	SUPERFAMILY	XPC-binding domain	1	49	IPR036353	GO:0003684\|GO:0006289\|GO:0043161

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso15g0020	Gso-Chr15	211074	213105	Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso15g0020	K10839		-	gsj:114387709	218.009

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso15g0020	15	211074	213105	Gso11g3778	11	53365274	53370315	GST
	Gso15g0020	15	211074	213105	Gso8g1865	8	18252231	18258212	PCT
	Gso8g1865	8	18252231	18258212	Gso15g0020	15	211074	213105	PCT