Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0016 ATGGGGGGTTCGGTGGTGGAGGACAACCACGACCTCGACCACGACCTCGACCTCGACGATACTCCCTTAGCATCTGCCTCTTCTAAATCCCACCAGCAATTCCATAGCTTCGATTTCGAGGATACAAGTGTTCTAGATTTGCGGCGCTCATCCATCTTTAACATAACACGTATGAGCAGGAGTATTTATTTTGTCTTAATTAAAGCCAAGATCAACCTCTTGCTTCCCTTTGGTCCATTCGCCATTCTCCTACATTACGTAACTGGACACCATGGATGGGTCTTCTTCTTCACCTTATTGGGGATTACTCCTTCGGCAGAACGTCTCGGTTATGCTACCGAGCAGCTTGCCTTCTACACAGGACCCACAGTTGGGGGTCTGCTTAATGCCACCTTTGGCAATGCAACTGAAATGATTATATCAATTTATGCATTGAAAAGCAATATGATAAGGGTTGTTCAGCAATCCCTACTCGGTTCAATCTTGTCAAATATGCTTCTAGTTCTTGGCTGTGCATTCTTTACTGGTGGCCTTGCCCACTACAAAAAAGTACAGGTTTTTGATAAGGCGGCTGCTGTTGTCAATTCTGGCTTACTCTTGATGGCTGTTATGGGAATACTATTTCCTGCTGTGCTTTACTTTACTCACTCCGAAGTTCATCAAGGGAAGTCAGTCTTGTCTCTTTCAAGATTTAGCAGCTGCATAATGCTACTGGCCTATGCAAGCTACCTTTTCTTTCAACTTAGAAGTCAGCAAAATGTTTATAGTCCGGTTGGTGAGGGAGGAGAGAATGGTGAAAATTCTGATGTGGAGGAAGATCTTGAATTAACTCAATGGGAGGCAATAATCTGGCTTGCTATCTTGACAGCATGGGTATCTATATTGTCTGGATACCTTGTAGACGCCATACAGGGAGCATCTGAGTCATTGAATATGTCAGTGGCTTTTATTTCTGTCATCTTGCTTCCAATTGTAGGCAATGCTGCAGAACATGCCAGTGCTATCATGTTTGCCGTGAAGGACAAGCTTGATATCACTATTGGAGTTGCTATTGGATCATCTACACAGATATCTATGTTTGTGATCCCTTTCTGTGTGGTTGTTGGATGGTGCATGGGAAAAGAAATGGACTTAAATTTTCAACTATTTGAGACTGCCACACTTTTTATCACTGTGTTAGTAGTTGCATTTATGATGCAGGAAGGAACCTCAAATTATTTTAAAGGGTTGATGCTTATACTATGCTATCTAATAGTTGCTGCCAGTTTTTTCGTACATGTAGACCCTAAAAGTGGTGATGACTAA 1305 0.4245 MGGSVVEDNHDLDHDLDLDDTPLASASSKSHQQFHSFDFEDTSVLDLRRSSIFNITRMSRSIYFVLIKAKINLLLPFGPFAILLHYVTGHHGWVFFFTLLGITPSAERLGYATEQLAFYTGPTVGGLLNATFGNATEMIISIYALKSNMIRVVQQSLLGSILSNMLLVLGCAFFTGGLAHYKKVQVFDKAAAVVNSGLLLMAVMGILFPAVLYFTHSEVHQGKSVLSLSRFSSCIMLLAYASYLFFQLRSQQNVYSPVGEGGENGENSDVEEDLELTQWEAIIWLAILTAWVSILSGYLVDAIQGASESLNMSVAFISVILLPIVGNAAEHASAIMFAVKDKLDITIGVAIGSSTQISMFVIPFCVVVGWCMGKEMDLNFQLFETATLFITVLVVAFMMQEGTSNYFKGLMLILCYLIVAASFFVHVDPKSGDD* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0016 434 Pfam Sodium/calcium exchanger protein 93 248 IPR004837 GO:0016021|GO:0055085
Gso15g0016 434 Pfam Sodium/calcium exchanger protein 282 421 IPR004837 GO:0016021|GO:0055085
Gso15g0016 434 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 16 431 IPR004713 GO:0006812|GO:0008324|GO:0016021
Gso15g0016 434 Gene3D - 269 425 IPR044880 -
Gso15g0016 434 Gene3D - 122 259 IPR044880 -
Gso15g0016 434 PANTHER VACUOLAR CATION/PROTON EXCHANGER 16 431 - -
Gso15g0016 434 TIGRFAM cax: calcium/proton exchanger 74 424 IPR004798 GO:0006816|GO:0015369
Gso15g0016 434 TIGRFAM caca2: calcium/proton exchanger 65 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0016 Gso-Chr15 183073 189536 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0016 20 433 Antiporters AT1G55730 70.120 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0016 K07300 - gmx:100792408 835.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0016 15 183073 189536 Gso11g3782 11 53400186 53409453 GST