Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0013 ATGAGCAACGTTAACATAGCCTCCACCTCTCGTGGTTCTACCTCCTCCTCCAATGGCCTTCTCACCGTCACCATTACCAGCACCAGCCACCCTGACGACCCTCCCACCGACGACAACGATGACGACGACTTGCTCGCTGATCCGGACGATCCTTTCGATATTACGCATACCAAAAATGCACCTCCCGAGGCCCTCAAGCGTTGGAGACAAGCAGCTTTCGTGCTCAATGCGTCCAGGCGTTTTAGGTACACTCTTGACTTGAAAAAGGAAGAGGAGAAAGAGCAAAAGAAAAGCATGATTAGATCCCACGCACAAGTCATCAGAGCAGCATTGCTTTTCAGATTGGCTGGTGAACGGGAACTAGTGACAAGTAAAGCAGCAGTGGCATCCCCATCTCCAGTTGGTGAATATACAGTTGGGCTCGAACAACTTGTTTCAATGACTAAGAATCAGAATATTTCTGCTTTACAACAATACGGAGGGGTTAAAGGCTTATCAAATTTACTAAAATCAAATCCGGATAAGGGGATTAGTGGAGATGATGTTGATCTATCAAAGAGGAAAAATGCATTTGGAACTAATACATACCCTCGGAAAAAGGGGAGAAGTTTCTGGAGGTTTCTATGGGAATCTTGGCAAGATCTGACTCTTATAATATTGATTATAGCAGCTGTAGTGTCGTTGGTACTTGGAATAAAAACAGAGGGCTTGGAAGAAGGGTGGTACGACGGGGGCAGCATTGCTTTCGCTGTTTTTCTTGTCATTATAGTTACAGCTGTCAGTGATTATCGGCAATCTTTGCAGTTTCAGAATTTAAATGCAGAGAAACAAAATATAAAATTGGAGGTCATTAGAGGTGGCAGAACAATACAAATATCCATATTTGATATTGTTGTTGGTGATTTAGTGCCCCTTAAAATAGGAGATCAGGTTCCTGCTGATGGAGTTGTAATCACTGGTCACTCGCTTGCCATTGATGAATCGAGTATGACTGGTGAAAGCAAGATTATTCACAAGGATCAAAAAGCACCTTTTTTGATGTCTGGTTGCAAAGTAGCAGATGGAGTTGGTGCTATGCTGGTAACTGGTGTTGGTATAAATACTGAGTGGGGATTGTTGATGGCAAGTATCTCAGAGGATACTGGAGAAGAGACTCCATTACAGGTTCGTTTGAATGGAGTAGCAACTTTTATTGGCATAGTTGGGCTTACTGTAGCTGTTTGTGTACTTGCAGTCCTCTTGGGAAGATATTTCTCTGGCCATACGAAAGATTTAGATGGAAGAGTACAATTTGTTGCTGGAGAGACTAGTATTAGCGAAGCAGTAGATGGGGTCATCAAAATTTTTACCATTGCAGTAACAATTGTGGTGGTTGCAGTGCCCGAAGGTCTACCTTTAGCAGTTACCTTAACCTTGGCATACTCAATGCGGAAAATGATGGCAGACAAAGCCTTGGTGCGAAGGCTGTCAGCATGCGAAACTATGGGATCTGCTACAACAATTTGCAGTGATAAGACTGGAACTTTGACCTTAAATCAGATGACTGTAGTTGAGGCATGTGTTGGAAGGAAGAAACTAAACCCACCAGATGACTTGACAAAATTGCATCCGGAAGTTTTATCTTTGATAAATGAGGGCATTGCACAAAATACAACTGGCAATGTTTTTGTGCCTAAGGATGGTGGAGAGGTGGAGGTTTCAGGGTCTCCTACGGAGAAGGCAATTCTTTCTTGGGCAGTGAAGTTGGGGATGAATTTTGATCTTATTAGATCAAATTCAACAATTCTACACGTCTTCCCCTTCAATTCTGAGAAAAAGCGAGGAGGCCTTGCTCTGAAACTGCCGGACTCTGCAGTACATATACATTGGAAAGGAGCTGCGGAGATAGTTCTAGGAACATGTACTCAATATCTTGATTCTGATGGTCACTTGAAATCTATTGAAGAAGAGAAGGTATTCTTCAAGAACTCTATCGAAGACATGGCTGCTCAGAGCTTGCGTTGTGTTGCCATTGCATACAGATCGTATGATTTAGACAAAATTCCATCAAATGAGGAGGAATTAGACCAGTGGTCCTTACCTGAACACGAGCTTGTCTTGCTTGCTATTGTTGGAATAAAGGATCCTTGTCGCCCTGGAGTCAAGGATGCTGTGAAAATATGCACCGAAGCCGGTGTTAAGGTACGGATGGTTACGGGTGACAATCTTCAAACAGCAAAAGCAATAGCTTTTGAGTGTGGAATACTGATGTCAAATGATGATGCTGTTGAGCCAAATATAATTGAAGGAAAGACATTCCGTGAACTATCTGAAAAAGAAAGGGAACAAGTTGCAAAAAAGATAACAGTTATGGGGAGGTCTTCTCCTACTGACAAGCTGTTGCTCGTGCAAGCACTACGTACAGGTGGTGAAGTTGTTGCTGTCACAGGAGATGGCACCAATGATGCTCCTGCACTTCATGAGGCAGATATTGGTCTTTCTATGGGCATCCAAGGAACAGAAGTTGCAAAAGAAAGTTCAGATATTATAATCTTGGATGATAACTTTGCATCAGTAGTAAAGGTTGTTCGCTGGGGCCGTTCTGTATATGCAAATATTCAGAAATTTATTCAGTTCCAGCTCACTGTTAATGTAGCTGCTCTTGTAATAAATGTTGTGGCAGCAATATCTTCTGGTGATGTTCCTTTAAATGCTGTACAGCTTTTGTGGGTCAACCTTATCATGGACACACTTGGGGCTCTTGCACTGGCTACGGAACCGCCAACAGACAACCTTATGCACAGATCACCAGTTGGCCGAAGGGAACCTCTTATAACAAATGTCATGTGGAGGAACTTGGGCGTACAGGCTCTCTATCAAGTCACTGTCCTTCTCGTTCTTAACTTCGGTGGTGAAAGTATTCTACGTAATGATCAGGATTCTGTAGCCCATACCATACAAGTGAAGAATACTTTAATTTTCAATGCATTCGTCTTTTGCCAAATATTCAACGAGTTCAATGCTCGAAAACCAGAAGAGATGAATGTCTTCCGGGGAGTGACTAAGAACGGTCTCTTCATGGGAATTGTTGGAATGACCTTCGTGCTTCAGATAATCATAATAGAGTTCCTTGGAAAATTCACAACGACAGTGAAGCTTGATTTGAAGCTGTGGCTTGCTTCTCTTTGTATTGGGCTTTTAAGCTGGCCTCTTGCGATAATTGGAAAATTCATTCCAGTTCCCAAAACACCACTGTCCCGATATTTCAGGAGATTGAGCAAGTCCAAGTCGCAATAG 3276 0.4274 MSNVNIASTSRGSTSSSNGLLTVTITSTSHPDDPPTDDNDDDDLLADPDDPFDITHTKNAPPEALKRWRQAAFVLNASRRFRYTLDLKKEEEKEQKKSMIRSHAQVIRAALLFRLAGERELVTSKAAVASPSPVGEYTVGLEQLVSMTKNQNISALQQYGGVKGLSNLLKSNPDKGISGDDVDLSKRKNAFGTNTYPRKKGRSFWRFLWESWQDLTLIILIIAAVVSLVLGIKTEGLEEGWYDGGSIAFAVFLVIIVTAVSDYRQSLQFQNLNAEKQNIKLEVIRGGRTIQISIFDIVVGDLVPLKIGDQVPADGVVITGHSLAIDESSMTGESKIIHKDQKAPFLMSGCKVADGVGAMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLTVAVCVLAVLLGRYFSGHTKDLDGRVQFVAGETSISEAVDGVIKIFTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEACVGRKKLNPPDDLTKLHPEVLSLINEGIAQNTTGNVFVPKDGGEVEVSGSPTEKAILSWAVKLGMNFDLIRSNSTILHVFPFNSEKKRGGLALKLPDSAVHIHWKGAAEIVLGTCTQYLDSDGHLKSIEEEKVFFKNSIEDMAAQSLRCVAIAYRSYDLDKIPSNEEELDQWSLPEHELVLLAIVGIKDPCRPGVKDAVKICTEAGVKVRMVTGDNLQTAKAIAFECGILMSNDDAVEPNIIEGKTFRELSEKEREQVAKKITVMGRSSPTDKLLLVQALRTGGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAISSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDNLMHRSPVGRREPLITNVMWRNLGVQALYQVTVLLVLNFGGESILRNDQDSVAHTIQVKNTLIFNAFVFCQIFNEFNARKPEEMNVFRGVTKNGLFMGIVGMTFVLQIIIIEFLGKFTTTVKLDLKLWLASLCIGLLSWPLAIIGKFIPVPKTPLSRYFRRLSKSKSQ* 1092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0013 1091 Coils Coil 644 664 - -
Gso15g0013 1091 Gene3D - 210 1064 - -
Gso15g0013 1091 PANTHER CALCIUM-TRANSPORTING ATPASE 49 1086 - -
Gso15g0013 1091 PANTHER CATION TRANSPORTING ATPASE 49 1086 - -
Gso15g0013 1091 SUPERFAMILY Calcium ATPase, transduction domain A 279 375 IPR008250 -
Gso15g0013 1091 Gene3D - 512 709 IPR023299 GO:0000166
Gso15g0013 1091 SUPERFAMILY HAD-like 500 914 IPR036412 -
Gso15g0013 1091 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 439 527 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso15g0013 1091 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 775 889 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso15g0013 1091 MobiDBLite consensus disorder prediction 24 61 - -
Gso15g0013 1091 Gene3D - 499 854 IPR023214 -
Gso15g0013 1091 Pfam Cation transporter/ATPase, N-terminus 160 227 IPR004014 -
Gso15g0013 1091 SFLD Haloacid Dehalogenase 484 861 - -
Gso15g0013 1091 Pfam Cation transporting ATPase, C-terminus 894 1071 IPR006068 -
Gso15g0013 1091 Pfam E1-E2 ATPase 278 480 - -
Gso15g0013 1091 Pfam haloacid dehalogenase-like hydrolase 499 823 - -
Gso15g0013 1091 SMART Cation_ATPase_N_a_2 158 232 IPR004014 -
Gso15g0013 1091 PRINTS Sodium/potassium-transporting ATPase signature 245 265 - -
Gso15g0013 1091 PRINTS Sodium/potassium-transporting ATPase signature 495 516 - -
Gso15g0013 1091 PRINTS Sodium/potassium-transporting ATPase signature 621 639 - -
Gso15g0013 1091 CDD P-type_ATPase_Ca_PMCA-like 184 942 - -
Gso15g0013 1091 Gene3D - 183 378 - -
Gso15g0013 1091 Pfam Ca2+-ATPase N terminal autoinhibitory domain 49 92 IPR024750 GO:0005516
Gso15g0013 1091 SFLD p-type atpase 484 861 IPR044492 -
Gso15g0013 1091 Gene3D - 62 114 - -
Gso15g0013 1091 SUPERFAMILY Calcium ATPase, transmembrane domain M 159 1073 IPR023298 -
Gso15g0013 1091 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 509 706 IPR023299 GO:0000166
Gso15g0013 1091 PRINTS P-type cation-transporting ATPase superfamily signature 326 340 - -
Gso15g0013 1091 PRINTS P-type cation-transporting ATPase superfamily signature 502 516 - -
Gso15g0013 1091 PRINTS P-type cation-transporting ATPase superfamily signature 702 713 - -
Gso15g0013 1091 PRINTS P-type cation-transporting ATPase superfamily signature 724 734 - -
Gso15g0013 1091 PRINTS P-type cation-transporting ATPase superfamily signature 809 828 - -
Gso15g0013 1091 PRINTS P-type cation-transporting ATPase superfamily signature 833 845 - -
Gso15g0013 1091 ProSitePatterns E1-E2 ATPases phosphorylation site. 504 510 IPR018303 -
Gso15g0013 1091 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 148 1073 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0013 Gso-Chr15 134137 152067 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0013 13 1084 Primary Pumps ATPases AT3G21180 75.673 0.0 1644
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0013 K01537 - gmx:100802659 2018.82