Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0011 ATGCAATTAGCGTCAAATGGTGACAAGGAAGAATGTTCAGAAAGCGAACCCATCTTGAATCATCACCATCTTCATTTGCCACCACCCGGAGAATCCTCCTTTTCCTGTGAAATTATTCCTATTTCTGCTGCTGCTTCCGGCGATGATGATTTACAAAACGTTCGGGTTGATGAGACTTGTCATCTCGTAAATGCAGATCAGCCACAATGCCGAATATGCCTCGATATTGGAGGAGAAGATTTAATTGCTCCATGCCATTGCAAAGGTACGCAAAAGTACGTCCACAGATCATGTCTCGATAATTGGAGATCCACCAAGGAGGGGTTCGCGTTTTCTCACTGTACAGAGTGCAGAGCTGTCTTCATATTACGTGCAAATGTCCCACCAGATCGGTGGTGGTTGAGATTAAAATTTCAGTTCCTTGTTGCTAGAGATCATGCATTCATTTTCATAATTGTTCAGCTGGTTGTTGCTTTCTTGGGAGTGCTTGTGTACAAATTTTATGGAGATGAACTGAGGGAAATGTTTGGTTATGAAGAACATCCATATGGATTTTATACAATGGCTGTTCTAGCCATTGTTTTGGTTGGTTTGCTCTATGGCTTCTTCATAGCGATAATATGTGGTCAAAGAATCAATGAACGCCACTACCATGTTCTTGCCAAACAAGAATTGACTAAGGAATATGTGGTTGAAGATCGAGAACATGTAAAGAATGTGCCTGAACTTGACCCCAGCCATGTGACAGAGCTAAGGATGTTGGGCCTTTACTAG 774 0.4212 MQLASNGDKEECSESEPILNHHHLHLPPPGESSFSCEIIPISAAASGDDDLQNVRVDETCHLVNADQPQCRICLDIGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFILRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLVVAFLGVLVYKFYGDELREMFGYEEHPYGFYTMAVLAIVLVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYVVEDREHVKNVPELDPSHVTELRMLGLY* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0011 257 Pfam RING-variant domain 70 117 IPR011016 GO:0008270
Gso15g0011 257 SUPERFAMILY RING/U-box 65 121 - -
Gso15g0011 257 SMART ringv_2 69 118 IPR011016 GO:0008270
Gso15g0011 257 ProSiteProfiles Zinc finger RING-CH-type profile. 62 124 IPR011016 GO:0008270
Gso15g0011 257 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 2 256 - -
Gso15g0011 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 122 IPR013083 -
Gso15g0011 257 PANTHER OS02G0132300 PROTEIN 2 256 - -
Gso15g0011 257 CDD RING_CH-C4HC3_MARCH 70 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0011 Gso-Chr15 119986 125089 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0011 31 216 C3H Transcription Factor Family AT1G50440 67.526 2.92e-89 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0011 - - gmx:100789593 533.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0011 15 119986 125089 Gso11g3787 11 53461357 53466544 GST