Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0003 ATGCCAAATATAGGAGTTTGTACAACTATGGATCCTGAATTTCTTAGAGCTCGTTCTTTAACTCTAGAGAAAATATATAATATACTATTGCAGCGGTACCAGCATCCCGTTACAGAAGCACATAGAAGGAAGGTTAAGGATCTTGCAAAACGCCTCGAAGAGGGCATGTTTAAAACTGCTATTTCTAAGGAGGACTACATGAACTTGGACACACTAGAGAGTCGCTTATCTAATTTCCTTAGAAGGTCATCTATGACTAATCACAACCAACAACATCCACAGCTTGTTAGCTCTTCTCCAATTGGTACAATGATACCAACCCCTGGTATGTCGCATGTTACAAATTCAACCATGATCATAGCATCTTCTGTGGATGCCTCAATGATTGCTGCCGGTGGGTGTAACAGCATAGCATCCTCATCTGTCAATAGTGTAAGCATGTTACCTGCTGGTAACATGCTTGGAAGCTCTTTAAATAGATCTGATGGAGGAAACATGTCATCAGTGGGGGTGCCAAGAGCTACTAGCCAGATGATTCCAACTCCAGGATTTAGTGTCAGTAATAATCGTTCATATACAAATCTGGATCCTTCAACTAACAGCAGTTCTTTTTCCGCTGTTGATTCTACAAAACTATCTCAGTCACAGTCACAACCGCAGCGGCACCAGAAGCTGCAAGATAGTGGCCACAACAATCATGCATTGCACAACCTTGGCAGTCAAATGGATGGTGGAATGAGATCTGATTTGCTGCAAAATTCATTTGCATATCCAAATGATTCTATAAATAATGGGCTAGGCTTGATTGGAAACAGCATACAACTTGCAAATGAACCTGGCACTGATGACTATTCTTCAGCGTACACTAATTCCCCTAAACACTTACAGCAGCACTTTGATCAAAATCAACAACTGGTAGTGCAGGGTGACAGATATGGATTGCTTAATGCTGACACTTTTACTTCTGTAAGCTTTTATGCATCTGCGACATCCTCTGGGTCTATGATGAACACTCAGAACATGAATGCAGTAAAATTGCCATCAATACCCATTACCAGCTCACTGATAAGTGGTCATTCAAATTTGAACAGTATGCATCAGACTTCTCATCAAAAGTCTCAGGCAATAAATTCATTGAAAAATTTAAAATACCAGTCTTCATTGACTTCAAGAGATGGTCATGTGCATACTCAACAGCAATATGAGCAAAGACCCCAACAATGTCACCAGTCAGAGCGGTATGCTCCACAGCAATTTCAACTGAAGCTGCAAGGTCAGCAACCTCAGCATTTGGTCAACAATGATGCCTTCTCTCAGTCTCAGCTCTCTTCCAATCTAGACAATATAGTAAAGTCTGAGTCTGGAGTTGAACCACATAAAGAAGTTCTTGATTCTCAGCTTTCTGAACAGTTCCGTGTATCTAAGATGCAGAACCAGTTCCAGCAAATTTCTTCTAATGATTGCTCTAAGGTTGCTCAACATTTTTCATTGGGCCAGAACGACTCATCCTCATCACCACCTCAGATTTCACAACAAATGTTGCATCCACATCGATTGCTTTCAGAGTCACAAAATAATTTTAGCTGTCTTTCAGCTGGGTCACAATCCACATCCATACTTATAAATCAATGGCCTCGATCACTAGATGGACACCACATTCCTCAGGGTATGCCACATGAACAGCATCTTCCCATGGATTTTCATCGAAGAATATCAGGGCAGGACGTAGCTCAATGCAATACTTTATCATCAGATGGATCTATTATTGGTCAAGCTGTTGCTCCCAGAAGCTCAACTGAGCAGATAGACCCAAGCAGTAATATAAAGAAGTCACACAGGAATCAACAGAGGTGGCTTTTATTTTTATTTCACGCTCGTCACTGTTCTGCCCCAGAAGGACATTGCCTAGAACGCCATTGTTCTACTGCACAAAAGTTATGTAATCACATAGATGGATGTACTATACCTTATTGTCCATATCCTCGTTGTCATCATACCAGGAGATTGCTTCTTCATTTCATAAAATGCAATAATCCACATTGCCCTGTTTGTGTTTTGGTAAGAAAGTATCGGCATGCATTTCAACTTAAGCCCAAAATTTGGTCAGATCCTGAATCATGTTTGGCAAATGCTTTAAATGGATCCTGCGAATCCTATAATGTGGTAGGCCCATCACCTAGATTGATCTCGAAGTCTCCACTAGTGGTTGAAACTTCAGAAGACCTACCATCTCTAAAGCGTATGAAAACTGAGCAGTGCACCCAGTCCATTAATCCTGAATATGACAATTCTTCTTCATCTGTTCTAAATTGTGACTCACGGGATTCAAAGGATACTCAGTGCCAAGTCTATCTCAGTGGTGAAATGTCTATATCAACTAAATCTGAGCCTACTGAAGTTAAAGAAGAAGTTCTGGTGCATTCAATTCATGAAAATCTTAGTGAGACAAAAATGGATGAGGATAGTGCACATGATAAAATGCCCACTGGTAAGCCTGTCACACATACTGAGCCAGCTAATATAGCTAGGCCAGAAAATATTAAAACTGAGAAACAAAGTGGACAAGATAAGCAAGAAAATGTGGACCAGCCATCTGATCATGGGGCTGGAACCAAGTCTGGTAAGCCAAAAATAAAGGGGGTCTCATTGACTGAGTTGTTTACTCCTGAGCAAGTCAGGGAACATATCACTGGCCTCAGGCGATGGGTTGGCCAAAGCAAATCAAAAGCAGAGAAGAATCAAGCAATGGAGCATTCAATGAGTGAGAACTCCTGTCAATTGTGTGCTGTAGAAAAACTAACTTTTGAACCATCCCCTATTTATTGCACAACATGTGGTGTTCGGATTAAACGAAATAATATGTATTATACCATGGGTACTGGTGATACACGGCATTATTTTTGTATTCCATGCTATAATGAGCCTCGTGGAGACACCATTGTTGTTGATGGGACTCCTTTTCCTAAGTCAAGGTTAGAAAAGAAGAAAAATGACGAGGAAACAGAGGAATGGTGGGTTCAATGTGATAAATGTGAGGCATGGCAACATCAAATTTGTGCCTTATTTAATGGTCGAAGAAATGATGGTGGACAAGCTGATTACACTTGCCCTAACTGCTATATTCAAGAAGTAGAAAGAAGTGAGCGCAAGCCCTTACCGCAAAGTGCTGTTCTTGGAGCCAAGGATTTACCAAGAACAATTCTCAGTGATCACATAGAACAACAATTATTTAGGAGACTAAAGCATGAAAGACAAGAGAGGGCCCGACTTCAAGGGAAAAGTTATGATGAGGTGCCTGGAGCTGAAGCTCTTGTTATAAGAGTTGTGTCATCTGTAGACAAGAAGTTAGAAGTTAAACAGAGGTTTTTGGAGATTTTTCAGGAAGAAAATTACCCAACAGAATTTCCATATAAATCGAAGGTAATCTTGTTGTTTCAGAAGATTGAAGGTGTGGAAGTATGCCTCTTTGGCATGTATGTTCAAGAGTTTGGATCTGAATGTCAATTTCCGAATCAACGGCGGGTTTATCTTTCATATCTGGACTCTGTAAAGTATTTTAGGCCTGAGGTTAAAGCAGTAACTGGAGAAGCTCTTCGGACATTTGTTTATCATGAAATTCTGATTGGATACCTTGAGTATTGCAAGAAACGTGGTTTTACAAGCTGCTACATATGGGCATGTCCTCCATTAAAGGGTGAAGATTATATTTTATATTGTCATCCGGAAATTCAGAAAACTCCAAAATCTGATAAGCTTAGGGAATGGTACCTGTCCATGTTAAGAAAAGCTTCCAAGGAGAATATTGTGGTTGATCTCACCAACTTGTACGATCATTTCTTTGTATCTTCTGGTGAATGTAGGGCTAAGGTTACAGCAGCAAGGCTCCCATATTTTGATGGTGACTACTGGCCTGGGGCTGCAGAGGATTTGATTTATCAGCTTCGTCAAGAGGAAGATGGAAGAAAACAAAATAAGAAAGGAACAACTAAGAAGACTATAACAAAAAGGGCTTTGAAAGCATCTGGTCAGTCAGATCTTTCTGGAAATGCCTCAAAAGACCTTCTCCTAATGCACAAACTTGGTGAAACCATTTGCCCAATGAAGGAAGATTTTATCATGGTTCATTTGCAGCATGCATGCACTCATTGCTGTATTCTAATGGTGTCTGGCAACCGTTGGGTTTGCAGGCAATGCAAGAATTTTCAGATCTGTGACAAGTGTTATGAAGCAGAACTAAAGCGCGAAGAGAGAGAACAGCATCCTATTAACCAGAGGGAAAAACACACCCTTTATCCTGTAGAAATTACTGATGTACCTGCCGATACGAAGGACAAAGACGAGATTCTTGAGAGTGAATTCTTTGACACTAGGCAGGCATTTCTGAGTCTCTGCCAGGGAAATCATTATCAGTATGATACTCTAAGGCGGGCCAAGCATTCCTCTATGATGATTTTGTATCATCTTCATAATCCAACTGCCCCTGCATTTGTTACAACATGTAATATTTGTCGTCTTGACATAGAAACAGGCCAAGGTTGGCGTTGTGAAGTTTGCCCTGAATATGATGTGTGCAATGCTTGTTATCAAAAGGACCGTGGCGCTGATCATCCTCATAAATTGACAAATCACCCATCAATGGCAGATCGTGATGCTCAGAACAAGGAAGCAAGGCAACTTCGAGTATTACAGTTACGAAAAATGCTTGATCTTCTTGTGCATGCATCTCAATGTCGTTCTGCCCACTGCCAATATCCAAATTGTCGCAAGGTGAAGGGGCTTTTCCGTCATGGGATGCATTGCAAAATCCGTGCCTCTGGAGGTTGTGTTCTATGCAAGAAAATGTGGTATTTGCTTCAACTCCATGCTCGTGCTTGCAAGGAATCTGAATGCCATGTACCACGTTGCAGAGATTTAAAAGAACACTTAAGGAGGTTGCAGCAACAGTCTGATTCAAGACGAAGAGCTGCTGTAATGGAGATGATGAGGCAGAGAGCTGCAGAAGTTGCCAACAGTTCTGGATGA 5022 0.41 MPNIGVCTTMDPEFLRARSLTLEKIYNILLQRYQHPVTEAHRRKVKDLAKRLEEGMFKTAISKEDYMNLDTLESRLSNFLRRSSMTNHNQQHPQLVSSSPIGTMIPTPGMSHVTNSTMIIASSVDASMIAAGGCNSIASSSVNSVSMLPAGNMLGSSLNRSDGGNMSSVGVPRATSQMIPTPGFSVSNNRSYTNLDPSTNSSSFSAVDSTKLSQSQSQPQRHQKLQDSGHNNHALHNLGSQMDGGMRSDLLQNSFAYPNDSINNGLGLIGNSIQLANEPGTDDYSSAYTNSPKHLQQHFDQNQQLVVQGDRYGLLNADTFTSVSFYASATSSGSMMNTQNMNAVKLPSIPITSSLISGHSNLNSMHQTSHQKSQAINSLKNLKYQSSLTSRDGHVHTQQQYEQRPQQCHQSERYAPQQFQLKLQGQQPQHLVNNDAFSQSQLSSNLDNIVKSESGVEPHKEVLDSQLSEQFRVSKMQNQFQQISSNDCSKVAQHFSLGQNDSSSSPPQISQQMLHPHRLLSESQNNFSCLSAGSQSTSILINQWPRSLDGHHIPQGMPHEQHLPMDFHRRISGQDVAQCNTLSSDGSIIGQAVAPRSSTEQIDPSSNIKKSHRNQQRWLLFLFHARHCSAPEGHCLERHCSTAQKLCNHIDGCTIPYCPYPRCHHTRRLLLHFIKCNNPHCPVCVLVRKYRHAFQLKPKIWSDPESCLANALNGSCESYNVVGPSPRLISKSPLVVETSEDLPSLKRMKTEQCTQSINPEYDNSSSSVLNCDSRDSKDTQCQVYLSGEMSISTKSEPTEVKEEVLVHSIHENLSETKMDEDSAHDKMPTGKPVTHTEPANIARPENIKTEKQSGQDKQENVDQPSDHGAGTKSGKPKIKGVSLTELFTPEQVREHITGLRRWVGQSKSKAEKNQAMEHSMSENSCQLCAVEKLTFEPSPIYCTTCGVRIKRNNMYYTMGTGDTRHYFCIPCYNEPRGDTIVVDGTPFPKSRLEKKKNDEETEEWWVQCDKCEAWQHQICALFNGRRNDGGQADYTCPNCYIQEVERSERKPLPQSAVLGAKDLPRTILSDHIEQQLFRRLKHERQERARLQGKSYDEVPGAEALVIRVVSSVDKKLEVKQRFLEIFQEENYPTEFPYKSKVILLFQKIEGVEVCLFGMYVQEFGSECQFPNQRRVYLSYLDSVKYFRPEVKAVTGEALRTFVYHEILIGYLEYCKKRGFTSCYIWACPPLKGEDYILYCHPEIQKTPKSDKLREWYLSMLRKASKENIVVDLTNLYDHFFVSSGECRAKVTAARLPYFDGDYWPGAAEDLIYQLRQEEDGRKQNKKGTTKKTITKRALKASGQSDLSGNASKDLLLMHKLGETICPMKEDFIMVHLQHACTHCCILMVSGNRWVCRQCKNFQICDKCYEAELKREEREQHPINQREKHTLYPVEITDVPADTKDKDEILESEFFDTRQAFLSLCQGNHYQYDTLRRAKHSSMMILYHLHNPTAPAFVTTCNICRLDIETGQGWRCEVCPEYDVCNACYQKDRGADHPHKLTNHPSMADRDAQNKEARQLRVLQLRKMLDLLVHASQCRSAHCQYPNCRKVKGLFRHGMHCKIRASGGCVLCKKMWYLLQLHARACKESECHVPRCRDLKEHLRRLQQQSDSRRRAAVMEMMRQRAAEVANSSG* 1674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0003 1673 MobiDBLite consensus disorder prediction 849 863 - -
Gso15g0003 1673 CDD PHD_HAC_like 967 1039 - -
Gso15g0003 1673 MobiDBLite consensus disorder prediction 811 831 - -
Gso15g0003 1673 Pfam PHD-finger 998 1040 IPR019787 -
Gso15g0003 1673 SUPERFAMILY RING/U-box 1476 1544 - -
Gso15g0003 1673 MobiDBLite consensus disorder prediction 747 773 - -
Gso15g0003 1673 SMART zz_5 1374 1418 IPR000433 GO:0008270
Gso15g0003 1673 SMART zz_5 1494 1540 IPR000433 GO:0008270
Gso15g0003 1673 Pfam Histone acetylation protein 1097 1317 IPR013178 GO:0004402|GO:0006355|GO:0016573
Gso15g0003 1673 ProSitePatterns Zinc finger PHD-type signature. 968 1039 IPR019786 -
Gso15g0003 1673 Gene3D TAZ domain 1552 1669 IPR035898 -
Gso15g0003 1673 MobiDBLite consensus disorder prediction 811 881 - -
Gso15g0003 1673 SUPERFAMILY FYVE/PHD zinc finger 1001 1042 IPR011011 -
Gso15g0003 1673 MobiDBLite consensus disorder prediction 388 414 - -
Gso15g0003 1673 SMART KAT11_2 1090 1387 IPR013178 GO:0004402|GO:0006355|GO:0016573
Gso15g0003 1673 SUPERFAMILY TAZ domain 611 690 IPR035898 -
Gso15g0003 1673 ProSiteProfiles Zinc finger ZZ-type profile. 1375 1438 IPR000433 GO:0008270
Gso15g0003 1673 SUPERFAMILY RING/U-box 1355 1429 - -
Gso15g0003 1673 MobiDBLite consensus disorder prediction 156 245 - -
Gso15g0003 1673 Gene3D - 1371 1429 IPR043145 -
Gso15g0003 1673 SMART TAZ_2 1558 1636 IPR000197 -
Gso15g0003 1673 SMART TAZ_2 609 687 IPR000197 -
Gso15g0003 1673 PANTHER CBP/P300-RELATED 124 1673 IPR013178 GO:0004402|GO:0006355|GO:0016573
Gso15g0003 1673 PANTHER ZINC FINGER, TAZ-TYPE-RELATED 124 1673 - -
Gso15g0003 1673 Pfam Zinc finger, ZZ type 1497 1536 IPR000433 GO:0008270
Gso15g0003 1673 ProSiteProfiles Zinc finger TAZ-type profile. 1555 1638 IPR000197 -
Gso15g0003 1673 Pfam TAZ zinc finger 616 684 IPR000197 -
Gso15g0003 1673 Pfam TAZ zinc finger 1565 1635 IPR000197 -
Gso15g0003 1673 ProSiteProfiles Zinc finger TAZ-type profile. 606 687 IPR000197 -
Gso15g0003 1673 SUPERFAMILY TAZ domain 1557 1640 IPR035898 -
Gso15g0003 1673 MobiDBLite consensus disorder prediction 1321 1345 - -
Gso15g0003 1673 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 992 1040 IPR013083 -
Gso15g0003 1673 ProSitePatterns Zinc finger ZZ-type signature. 1500 1527 IPR000433 GO:0008270
Gso15g0003 1673 ProSiteProfiles Zinc finger ZZ-type profile. 1495 1548 IPR000433 GO:0008270
Gso15g0003 1673 ProSiteProfiles CBP/p300-type histone acetyltransferase (HAT) domain profile. 1057 1493 IPR031162 GO:0004402
Gso15g0003 1673 Gene3D TAZ domain 602 692 IPR035898 -
Gso15g0003 1673 MobiDBLite consensus disorder prediction 748 773 - -
Gso15g0003 1673 Gene3D - 1494 1546 IPR043145 -
Gso15g0003 1673 MobiDBLite consensus disorder prediction 156 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0003 Gso-Chr15 26493 50071 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Gso15g0003 HAT_KAT11 8e-32 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0003 K04498 - gmx:100800511 3392.05