Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g1892 ATGCATATGTATGGATACAGAGCAAGGGTTTTTCTGCGCTCAATTTCACTTTGTAAATCAAAGTGGCATAATCACCATCTCCATGGAAGTCTAATCCATTTCTCTCAAAATCTCACCTCCACAGCTGGTCGTGAATTTACGGAATTTGCAACAGAACCGTCTATGCAGAGGCAAGTTGTGGAGGCACTCCACTCGGGTGACAGAAAGAAGGCTTCAGACTTACTTTCGGATTTTGGTTCCAGAAGCCGCCACTCATTAACAGCTGACCATTTTGTTCACATTTTTGAGTACTGTGCTCGCTCTCCTGATCCTTTGTTTGTTATGGAGATTTTGAGATTCATGGAGTTAAAAGGTGTTAGCATGAACAATATATGCTCATCTCTTATGATGCAGGCCCTTTGTAATGGGGGTTACTTGGAAGAGGCCTTTGATATCGTTGATTATCTTGGAGGAAGTCAACGTCTCTATCCAGTTCTCCCACTGTACAATAGTCTCTTAAGATCCTGCACAACAATGCAGAATATAATTCAAGCAAGCAGATGTTTGGACTTAATGGAAAAGAAGATGGTAGGGAAGAATGAAGTTACATATATTGAGCTTCTCAAGCTTGCAGTTTTGCAGAAAAACTTGCCTGCAGCTCATCTCATTTGGCAGGAGTATATTAAAAACTATAGCATGAGTATCATGGCTCTGGATAGATTCATTTGGTCATTTACAAGGTTAGGAGATTTAGAATCTGCATATAAAATACTACTAGAAATGATTTCATTAGCCACCAGGGGAAACATTCCTATTGCTAGAACAGTTCATGGGAAGGTGTATACTAATAGACTGGACATCCCTGTGCCTTCAAATAAAGGGCCAGGCTCAACCATGTTGGACTTGAAGGAGAACAAAAAATTGGACTATTGTATGCACCCTCCTCTTATGTATATACCTGACAGTATTTCTGCAAGTATAGAGCAACAGATTATTTGCATGGGGAATAAAAAAGCTAAGAGTACTGAATTAGCTGGGCTGAATGGGCAAAAACATCCGCTGCTTAAGAAGGCGTTGAGTCGGTCTTTTGATGATATAATACATGGGTGTGCAAAACAAAAGAATCATATGCTTGCAAGGAAGCTTATGTTACAGATGACAAATCTTGGTTTGCAGCCATCCAGACATACATATAATGGCATTATTAAAGTTGTTTCTCATAGAAGCTTTGGGGATGCCATAAGAGTGTTGAAAAAGATGCAGCAGAAGAATTTGAAGCCATATGATTCAACTCTAGCGTCACTTTCAATCACTTGCAGCAAAGCACTACAACTAGATTTAGCTGAGGCTTTTCTGAATCAAATTTCTGAATGTCTATATCCAAATCCTTATAATGCTTTGCTAGCATCATGCGATCAACTGAATCAACTTGAACGTGCTATTCGAGTGTTTGCCAAGATGGAGCAGAAAAAAGTTTTACCTAATATCAGGACATGCGAGCTTCTGTTTTCGTTATTTGGAGTTGTAAATGGCCATTACGAAGACAGTGATGCGCTGTCAAAGGTGGATGTTGCTAAAAGAATAAATGCTATACAAAAGCATATGGCCAACAATGGCATTCAGCATAGTCACCTTTCAATGAATAAATTAATGAGAGCCCTTGGAGAAGAAGGGATGATAAAAGAGTTGATCCAGTATTTACATGTGGCAGAAAATCTTTTCATTTATAGAAACCCTTCATTGGGAACACATATGTACAACACAGTGTTACATTATCTTGTTGAAGCCAAGGAAAGTGACACGGTGATTGCAATTTTCAAGAAGATGAAGTTATGTGGCTGCCACCCTGATTCTGAAACATACAATATAATGATTGACTGTTGTACCATCCTAAAAAGTTACAGATCTGCTTGTTTGCTGCTTTCAATGATGATACGGAAAGGGTTTCATCCAGTGATTTGTACATATAACGCTATCATTGAGATTTTGTTGGAAGATGAGAACTTTAATGAAGCCCTGAATCTTTTGAAACAAGTCATATTGGATGGCATTCAACCTGATGTACTGCTGTTTAATACAGTTCTTAAAGAAGCATGCTACAAGGGAAGGATTGATGTAATTGAGTTTATTGTGGAGTGTATGCGCCGAGAGAAAGTTCCCCCAGATACAAGAACATGTGGCTATGTCTTCTCTGCATATGTAGATTCTGGTTTTCACAATACAGCAATTGAAGCATTGCAGGTTTTAAGTTTGCGTATGATGTCTGAAGATGGCAACATACTTAGAGAGAATACAAATTTTGTGAATGAATTCATCCTATCTGAAGATGTGGCTGTTGTTGAGTCACAGATACTTAAATTATTTGAAGATTCTGAAGATGAACTTGCAATTGGGTTGTTGAATTTAAGATGGTGTGCAATAGCTGGGTTCCCAATCTGCAAGTCAGCTGATCAAAGTCTATGGGCTAAAAGACTGGAAGGAATGCAATTGTGA 2472 0.3867 MHMYGYRARVFLRSISLCKSKWHNHHLHGSLIHFSQNLTSTAGREFTEFATEPSMQRQVVEALHSGDRKKASDLLSDFGSRSRHSLTADHFVHIFEYCARSPDPLFVMEILRFMELKGVSMNNICSSLMMQALCNGGYLEEAFDIVDYLGGSQRLYPVLPLYNSLLRSCTTMQNIIQASRCLDLMEKKMVGKNEVTYIELLKLAVLQKNLPAAHLIWQEYIKNYSMSIMALDRFIWSFTRLGDLESAYKILLEMISLATRGNIPIARTVHGKVYTNRLDIPVPSNKGPGSTMLDLKENKKLDYCMHPPLMYIPDSISASIEQQIICMGNKKAKSTELAGLNGQKHPLLKKALSRSFDDIIHGCAKQKNHMLARKLMLQMTNLGLQPSRHTYNGIIKVVSHRSFGDAIRVLKKMQQKNLKPYDSTLASLSITCSKALQLDLAEAFLNQISECLYPNPYNALLASCDQLNQLERAIRVFAKMEQKKVLPNIRTCELLFSLFGVVNGHYEDSDALSKVDVAKRINAIQKHMANNGIQHSHLSMNKLMRALGEEGMIKELIQYLHVAENLFIYRNPSLGTHMYNTVLHYLVEAKESDTVIAIFKKMKLCGCHPDSETYNIMIDCCTILKSYRSACLLLSMMIRKGFHPVICTYNAIIEILLEDENFNEALNLLKQVILDGIQPDVLLFNTVLKEACYKGRIDVIEFIVECMRREKVPPDTRTCGYVFSAYVDSGFHNTAIEALQVLSLRMMSEDGNILRENTNFVNEFILSEDVAVVESQILKLFEDSEDELAIGLLNLRWCAIAGFPICKSADQSLWAKRLEGMQL* 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g1892 823 Pfam PPR repeat family 576 621 IPR002885 -
Gso14g1892 823 Gene3D Tetratricopeptide repeat domain 660 758 IPR011990 GO:0005515
Gso14g1892 823 Gene3D Tetratricopeptide repeat domain 513 659 IPR011990 GO:0005515
Gso14g1892 823 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 575 609 IPR002885 -
Gso14g1892 823 TIGRFAM PPR: pentatricopeptide repeat domain 647 681 IPR002885 -
Gso14g1892 823 TIGRFAM PPR: pentatricopeptide repeat domain 613 644 IPR002885 -
Gso14g1892 823 TIGRFAM PPR: pentatricopeptide repeat domain 578 611 IPR002885 -
Gso14g1892 823 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 610 644 IPR002885 -
Gso14g1892 823 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 645 679 IPR002885 -
Gso14g1892 823 Pfam Pentacotripeptide-repeat region of PRORP 355 488 IPR033443 -
Gso14g1892 823 Gene3D Tetratricopeptide repeat domain 353 512 IPR011990 GO:0005515
Gso14g1892 823 Gene3D Tetratricopeptide repeat domain 52 274 IPR011990 GO:0005515
Gso14g1892 823 Pfam PPR repeat 127 147 IPR002885 -
Gso14g1892 823 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 453 487 IPR002885 -
Gso14g1892 823 Pfam Pentatricopeptide repeat domain 668 728 IPR002885 -
Gso14g1892 823 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 819 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g1892 Gso-Chr14 51367451 51376739 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g1892 405 740 Glycosyltransferase AT1G05670 22.527 4.25e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g1892 - - gmx:100780147 1647.1