LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso14g1891	ATGATGGAGGAGATAGACCCCAGAAGTGGTTTCTGCAGCTCCAATTCAATCTTCTACAGCAAGCGTAAGCCCCTCCCACTCCCTCCCAACAACGCCTTAGACGTCACCACCTTCATCTCCTCCCGCGCCCACCGCGCCACCACAGCCTTCGTCGACGCCGCCACCGCCCGCCGCCTCACCTACACCCAGCTATGGCGTTCCGTGGAGGGCGTGGCAGCCTCTCTCTCCGTGGACATGGGGATCCGAAAGGGCAACGTGGTCCTCATCCTCTCCCCCAACTCCATCCACTTCCCCGTTGTGTGCCTGGCCGTCATGTCCCTCGGCGCCATCATCACCACCACCAACCCCCTCAACACCACCCGCGAAATCGCCAAGCAGATCGCCGATTCCAAGCCTCTCCTCGCCTTCACGATCTCTGATTTACTCCCCAAAATCACCGCAGCTGCACCCTCTCTACCAATCGTTCTCATGGACAACGACGGCGCCAATAATAACAATAACAATAATAATATCGTGGCCACTCTTGATGAGATGGCGAAGAAGGAACCGGTGGCTCAGCGCGTGAAAGAGCGCGTGGAGCAGGACGACACGGCCACGCTGCTCTACTCCTCCGGCACCACGGGGCCCAGCAAGGGCGTGGTATCGTCCCACCGCAACCTCATAGCAATGGTCCAGATCGTGCTGGGTCGGTTCCACATGGAGGAGAACGAAACCTTCATATGCACGGTCCCCATGTTTCACATATACGGCCTGGTCGCCTTCGCCACGGGGCTTCTGGCTTCCGGCTCCACCATCGTCGTGCTCTCCAAGTTCGAGATGCACGACATGCTCTCCTCGATCGAGAGGTTCCGCGCCACTTACCTCCCGCTCGTGCCGCCCATTCTGGTGGCCATGCTCAACAACGCCGCCGCTATCAAGGGCAAGTACGATATCACGTCGCTGCATTCGGTGCTCTCCGGTGGGGCTCCGTTGAGCAAGGAGGTCATAGAGGGCTTTGTGGCCAAGTATCCCAACGTCACCATCCTTCAGGGTTATGGTTTGACGGAATCCACCGGCGTTGGGGCCTCCACCGACTCCTTGGAGGAGAGTCGAAGGTACGGCACGGCGGGGCTCTTGTCTCCGGCCACCCAGGCTATGATCGTCGATCCTGAATCCGGCCAATCGCTTCCGGTTAACCGCACCGGGGAGCTCTGGCTCAGGGGTCCCACCATCATGAAAGGTTATTTCAGTAACGAAGAAGCAACCACATCAACCCTTGATTCAAAAGGATGGTTAAGAACAGGGGATATTTGTTACATTGACAATGATGGATTCATATTTATTGTGGATCGGTTAAAGGAGCTCATCAAATACAAGGGATATCAGGTTCCTCCAGCAGAACTAGAGGCCTTGCTACTGACTCATCCTGCTATTTTAGATGCCGCTGTTATCCCGTATCCAGATAAGGAAGCTGGGCAGCATCCAATGGCATACGTGGTGAGGAAGGCTGGAAGTAGCTTATCAGAAACTCAAGTTATGGATTTTGTTGCAGGACAGGTGGCTCCGTACAAGCGGATTCGAAAAGTGGCATTTATTTCCTCCATACCCAAAAATCCATCTGGCAAAATTCTTCGGAAGGATCTCATCAAACTCGCAACGTCTAAACTCTGA	1650	0.5527	MMEEIDPRSGFCSSNSIFYSKRKPLPLPPNNALDVTTFISSRAHRATTAFVDAATARRLTYTQLWRSVEGVAASLSVDMGIRKGNVVLILSPNSIHFPVVCLAVMSLGAIITTTNPLNTTREIAKQIADSKPLLAFTISDLLPKITAAAPSLPIVLMDNDGANNNNNNNNIVATLDEMAKKEPVAQRVKERVEQDDTATLLYSSGTTGPSKGVVSSHRNLIAMVQIVLGRFHMEENETFICTVPMFHIYGLVAFATGLLASGSTIVVLSKFEMHDMLSSIERFRATYLPLVPPILVAMLNNAAAIKGKYDITSLHSVLSGGAPLSKEVIEGFVAKYPNVTILQGYGLTESTGVGASTDSLEESRRYGTAGLLSPATQAMIVDPESGQSLPVNRTGELWLRGPTIMKGYFSNEEATTSTLDSKGWLRTGDICYIDNDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPAILDAAVIPYPDKEAGQHPMAYVVRKAGSSLSETQVMDFVAGQVAPYKRIRKVAFISSIPKNPSGKILRKDLIKLATSKL*	550

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso14g1891	549	PANTHER	LONG-CHAIN-FATTY-ACID--COA LIGASE	7	548	-	-
	Gso14g1891	549	CDD	4CL	27	541	-	-
	Gso14g1891	549	Pfam	AMP-binding enzyme C-terminal domain	460	535	IPR025110	-
	Gso14g1891	549	ProSitePatterns	Putative AMP-binding domain signature.	200	211	IPR020845	-
	Gso14g1891	549	Gene3D	-	16	446	IPR042099	-
	Gso14g1891	549	SUPERFAMILY	Acetyl-CoA synthetase-like	42	546	-	-
	Gso14g1891	549	Pfam	AMP-binding enzyme	43	451	IPR000873	-
	Gso14g1891	549	Gene3D	-	447	548	IPR045851	-
	Gso14g1891	549	PANTHER	4-COUMARATE--COA LIGASE-LIKE 3-RELATED	7	548	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso14g1891	Gso-Chr14	51361572	51365030	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso14g1891	5	549	Monolignol Biosynthesis Gene Families	AT1G20500	64.781	0.0	738

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso14g1891	K10526		-	gmx:100811344	1052.35

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