Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g1885 ATGGGCAACTGGAGCAGTGAACGTCATCAAACCACTCAACAAAGTGATCTCGGTGCAGTTTTGCGTGATGGAAAAGAAGTACTTCTTCAAGCATTCAACTGGGAGTCCAACAAATACAACTGGTGGAATAATTTAGAAGGCAAAGTTTCTGACATAGCTAAAGCAGGATTTACTTCAGTCTGGTTGCCACCACCAACCCACTCCTTCTCACCTGAAGGTTATACTCCGCAGAACCTTTACTCTCTTAATAGTAAATATGGTTCTGAGCGTCAGTTAAAAGCTTTACTTCAAAAGATGAAGCAATACAAAGTAAGAGCAATGGCTGACATAGTTATTAATCATCGTACTGGCACCACCCAAGGACGCGGAGGGATGTATAATCGTTTTGATGGAATTCCATTAGGTTGGGATGAACGTGCTGTGACATCAGATTCTGGAGGACTGGGTAATCGAAGCACAGGAGCCATTTTCCAAGGGTTTCCCAATATTGACCATACTCAAGATTTCGTGAGAAAGGATATCATAGGATGGCTCCGTTGGCTGCGCCACGAGGTGGGCTTCCAGGATTTTCGATTTGATTTTGTAAAGGGGTTTTCACCAAAATATGTGAAAGAATATATTGAAGGAGCAAAGCCATTGTTTTGTGTTGGGGAGTACTGGGATTCTTGCAACTACAAGGGTTCTACCTTGGACTATAACCAAGATAGCCATAGACAGCGAATAATCAATTGGATTGATGGCACTGGACAACTTTCAACTGCATTTGACTTTACAACAAAGGGAATTCTCCAGGAAGCTGTCAAAGGAAATTTTTGGCGTCTGCGTGATCCTCAAGGGAAGCCTCCAGGTGTGATCGGATGGTGGCCCTCAAGATCTGTCACATTTGTAGATAATCATGATACAGGTTCAACTCAGGCTCATTGGCCCTTCCCAAAAGACCATATCATGGAGGGGTATGCATACATATTGACTCATCCTGGGATACCAACAGTTTTCTATGACCACTTCTATGACTGGGGTGATTCAATTCGGGAGCAGATTGTGAAGTTGATTGATGTTCGCAAGCGTCAAGGTATTCAAAGTAGATCATCTGTGAGAATTCTGGAGGCCAAGCACGACCTTTACTCTGCAGTAATCGGAGAGAAGGTGTGCATGAAGATTGGAAATGGTTCATGGTGCCCAACTGGGAGGGAATGGACACTATCAACTTCTGGTCACAATTATGCTGTGTGGCACAAGTAG 1242 0.4372 MGNWSSERHQTTQQSDLGAVLRDGKEVLLQAFNWESNKYNWWNNLEGKVSDIAKAGFTSVWLPPPTHSFSPEGYTPQNLYSLNSKYGSERQLKALLQKMKQYKVRAMADIVINHRTGTTQGRGGMYNRFDGIPLGWDERAVTSDSGGLGNRSTGAIFQGFPNIDHTQDFVRKDIIGWLRWLRHEVGFQDFRFDFVKGFSPKYVKEYIEGAKPLFCVGEYWDSCNYKGSTLDYNQDSHRQRIINWIDGTGQLSTAFDFTTKGILQEAVKGNFWRLRDPQGKPPGVIGWWPSRSVTFVDNHDTGSTQAHWPFPKDHIMEGYAYILTHPGIPTVFYDHFYDWGDSIREQIVKLIDVRKRQGIQSRSSVRILEAKHDLYSAVIGEKVCMKIGNGSWCPTGREWTLSTSGHNYAVWHK* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g1885 413 CDD AmyAc_arch_bac_plant_AmyA 27 365 - -
Gso14g1885 413 Pfam Alpha-amylase C-terminal beta-sheet domain 356 412 IPR012850 GO:0004556|GO:0005509|GO:0005975
Gso14g1885 413 SUPERFAMILY (Trans)glycosidases 34 343 IPR017853 -
Gso14g1885 413 PANTHER ALPHA-AMYLASE 2-RELATED 22 413 - -
Gso14g1885 413 Gene3D - 359 413 IPR013780 -
Gso14g1885 413 SMART aamy 26 366 IPR006047 GO:0005975
Gso14g1885 413 SUPERFAMILY Glycosyl hydrolase domain 359 413 - -
Gso14g1885 413 PRINTS Alpha-amylase signature 103 114 IPR006046 GO:0004556|GO:0005975|GO:0043169
Gso14g1885 413 PRINTS Alpha-amylase signature 187 198 IPR006046 GO:0004556|GO:0005975|GO:0043169
Gso14g1885 413 PRINTS Alpha-amylase signature 290 302 IPR006046 GO:0004556|GO:0005975|GO:0043169
Gso14g1885 413 PIRSF Alpha-amylase_plant 3 413 IPR013775 GO:0004556|GO:0005509|GO:0005975
Gso14g1885 413 SMART alpha-amyl_c2 355 413 IPR012850 GO:0004556|GO:0005509|GO:0005975
Gso14g1885 413 Pfam Alpha amylase, catalytic domain 52 116 IPR006047 GO:0005975
Gso14g1885 413 Gene3D Glycosidases 26 358 - -
Gso14g1885 413 PANTHER ALPHA-AMYLASE 22 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g1885 Gso-Chr14 51281948 51287642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g1885 1 413 Glycoside Hydrolase AT1G76130 75.061 0.0 676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g1885 K01176 - gmx:100813490 885.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1885 14 51281948 51287642 Gso17g2219 17 41854659 41859259 GST