Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g1873 ATGGGCAAAATGGGCAAAATTATGCTTGTTTTGGGTAGCCTCATTGGATTATGCTGTTTTTCAATCAATACCTATGCCTTCTCACCTTCTGGATGGACCAATGCCCATGCCACTTTTTACGGGGGTAGTGATGCTTCAGGAACTATGGGGGGAGCTTGTGGGTATGGGAATCTGTATGCAACTGGGTATGGAACTAGAACTGCAGCTTTAAGCACTGCCTTATTTAATGATGGAGCTTCCTGTGGTCAGTGCTACAAAATTATATGTGATTACAAAGCAGACTCTAGATGGTGCATCAAAGGAAGATCTGTAACCATTACTGCCACAAACTTTTGCCCTCCCAATTTCGCCCTTCCTAACAACAATGGAGGCTGGTGCAACCCACCACTCAAGCATTTTGATATGGCCCAACCCGCTTGGGAAAAGATTGGTATTTACAGAGGAGGGATCGTCCCCGTGCTATTCCAAAGGGTTCCATGCAAAAAGCATGGGGGGGTTAGGTTCAGTGTGAATGGGAGGGACTACTTCGAGCTAGTGTTGATCAGCAATGTGGGTGGTGCTGGATCCATCCAATCTGTGTCCATTAAAGGCTCAAAAACTGGATGGATGGCTATGTCTCGAAATTGGGGTTCTAATTGGCAATCCAATGCGTATTTGAATGGTCAATCTTTGTCCTTCAGGGTCACCACCACTGACGGAGAAACCAGAGTTTTCCAAGATATTGTTCCAGCAAGTTGGACATTCGGCCAAACTTTCTCTAGCCCAGTTCAGTTCTAA 777 0.4569 MGKMGKIMLVLGSLIGLCCFSINTYAFSPSGWTNAHATFYGGSDASGTMGGACGYGNLYATGYGTRTAALSTALFNDGASCGQCYKIICDYKADSRWCIKGRSVTITATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFSVNGRDYFELVLISNVGGAGSIQSVSIKGSKTGWMAMSRNWGSNWQSNAYLNGQSLSFRVTTTDGETRVFQDIVPASWTFGQTFSSPVQF* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g1873 258 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Gso14g1873 258 PRINTS Expansin signature 91 102 IPR002963 GO:0009664
Gso14g1873 258 PRINTS Expansin signature 104 114 IPR002963 GO:0009664
Gso14g1873 258 PRINTS Expansin signature 123 140 IPR002963 GO:0009664
Gso14g1873 258 PRINTS Expansin signature 140 153 IPR002963 GO:0009664
Gso14g1873 258 PRINTS Expansin signature 164 176 IPR002963 GO:0009664
Gso14g1873 258 PRINTS Expansin signature 176 197 IPR002963 GO:0009664
Gso14g1873 258 PRINTS Expansin signature 211 232 IPR002963 GO:0009664
Gso14g1873 258 PRINTS Expansin signature 240 256 IPR002963 GO:0009664
Gso14g1873 258 SUPERFAMILY PHL pollen allergen 162 254 IPR036749 -
Gso14g1873 258 Pfam Expansin C-terminal domain 166 243 IPR007117 -
Gso14g1873 258 PANTHER EXPANSIN-A15 7 258 IPR002963 GO:0009664
Gso14g1873 258 Gene3D - 18 161 IPR036908 -
Gso14g1873 258 Pfam Lytic transglycolase 67 154 IPR009009 -
Gso14g1873 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 254 IPR007117 -
Gso14g1873 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 165 IPR007112 -
Gso14g1873 258 SMART dpbb_1 67 155 IPR007112 -
Gso14g1873 258 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Gso14g1873 258 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Gso14g1873 258 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Gso14g1873 258 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576
Gso14g1873 258 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576
Gso14g1873 258 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576
Gso14g1873 258 PANTHER EXPANSIN 7 258 - -
Gso14g1873 258 Gene3D - 165 258 IPR036749 -
Gso14g1873 258 SUPERFAMILY Barwin-like endoglucanases 31 183 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g1873 Gso-Chr14 51154730 51156693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g1873 67 258 Expansin Gene Family AT1G20190 83.333 2.15e-122 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g1873 - - gmx:548040 536.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1873 14 51154730 51156693 Gso17g2210 17 41805155 41807115 GST
Gso14g1873 14 51154730 51156693 Gso4g0193 4 1706420 1708331 PCT
Gso14g1873 14 51154730 51156693 Gso6g0175 6 1639989 1641269 PCT
Gso4g0193 4 1706420 1708331 Gso14g1873 14 51154730 51156693 PCT
Gso6g0175 6 1639989 1641269 Gso14g1873 14 51154730 51156693 PCT