Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g1860 ATGGCAGAAGTGGAACTAGCCCCAGATTCACTTATAGAACAAAATGTAACATCTAAAACGGTCCAACAATCCAAAACCGATAGTGTTTCGTTTTTCGGCTTGTTTGCTGCGGCTGATGCAACTGACTGTGTCTTGATGTTCCTCGGAAGTGTCGGTTCGTGTGTCCATGGTGCTGCTCTTCCCGTTTTCTTCATTTTGTTTGGTCGTATGATCGACTCTTTGGGACATCTCTCTAATAATCCTCACAAATTGTCCTCGCGAATTTCTGAGCATGCTTTGTATTTGGTCTATCTTGGAGGAGTTGTTCTGGTATCAGCTTGGATGGGTGTTGCATTCTGGATGCAAACAGGGGAGAGGCAAACGGCACGTTTGCGCTTGAAATATTTGCAGGCAGTGCTAAAGAAGGATATTAATTTCTTTGACAATGAAGCCAGGGATGCTAATATCATTTTCCACATCTCGAGTGACGCAATATTGGTACAAGATGCAATTGGAGACAAGACAGGCCATGCCATTCGTTACCTTTCCCAATTCATTGTTGGATTCGCCATTGGATTTACCTCAGTGTGGCAGCTCACACTACTCACCTTGGCTGTGGTTCCGTTGATAGCTGTAGCTGGGGGAGCTTATACAATAATTATGTCTACTTTATCAGAAAAGGGTGAAGCAGCTTATGCTGAAGCTGGAAAGGTTGCAGAAGAGGTGATTTCTCAGGTGCGTACTGTTTACTCATTTGTAGGAGAAGAGAAAGCAGCTGGCTCATACTCAAAGTCTCTTGATAATGCTCTGAAGTTGGGCAAGAAGGGTGGTTTTGCAAAAGGAGTTGGAGTAGGCTTCACATATGGGCTATTATTTTGTGCTTGGGCATTGCTTTTATGGTATGCTAGCATACTTGTGAGGCATCATAAGACAAATGGAGGCAAAGCGTTCACAACAATTATCAATGTCATCTTTAGTGGATTTGCTCTTGGTCAAGCTGCTCCAAACCTTGGTTCCATTGCCAAAGGGCGCGTTGCTGCAGCCAATATCATGAACATGATTGCGTCCGCTTCAAGAAATTCTAAAAAGTTGGATGATGGCAATATTGTCCCACAAGTAGCAGGGGAAATTGAATTTTGTGAGGTCTGCTTTGCTTACCCCTCAAGATCCAATATGATCTTTGAAAAATTGAGCTTCTCAGTGAGTGCTGGGAAGACTATAGCAGTTGTAGGTCCAAGTGGTTCCGGAAAGAGCACGATCGTTTCACTAATTCAACGGTTCTATGACCCCACTTCAGGTAAGATCCTGTTGGATGGATATGACCTAAAGAATCTTCAATTGAAATGGTTGAGAGAACAGATGGGCTTGGTTAGTCAAGAACCAGCACTATTTGCCACAACAATCGCTGGAAATATTTTATTCGGAAAGGAAGACGCAGACATGGATAAAGTCATACAAGCTGCCATGGCTGCAAATGCTCATTCTTTCATTCAAGGATTACCTGATGGTTATCAAACTCAGGTTGGAGAAGGTGGCACCCAACTTTCAGGGGGCCAAAAGCAAAGAATTGCCATAGCAAGAGCAGTGCTAAGAAACCCAAAAGTATTGCTTTTAGATGAGGCCACAAGTGCTCTAGATGCTGAATCGGAGCTCATTGTCCAACAGGCATTGGAAAAAATAATGTCAAACAGAACAACAATAGTTGTTGCTCATAGATTATCCACCATACGCGATGTAGATACAATTGTTGTGTTGAAGAACGGCCAGGTGGTTGAAAGTGGGACTCATTTGGAATTAATGTCCAACAATGGAGAGTATGTGAATCTGGTGAGTTTGCAAGCATCACAAAGCCTCACAAACTCTAGATCAATATCTTGCTCCGAAAGTTCAAGAAATTCTAGTTTTAGAGAACCTTCAGACAACCTGACCTTAGAGGAGCCGTTGAAGTTGGATACAGCAGCAGAACTGCAATCAAGAGATCAACACTTGCCATCAAAGACTACTTCCACTCCATCAATTTTGGATTTACTGAAACTGAATGCTCCAGAGTGGCCCTATGCAATACTTGGGTCAGTAGGTGCAATATTGGCTGGCATGGAAGCCCCTCTCTTTGCACTTGGAATCACTCACATTTTGACTGCATTTTATTCTCCTCAGGGTTCTAAAATCAAGCAAGAAGTTGATTGGGTTGCTTTTATATTTCTTGGAGTAGCTGTTATTACTATACCTATTTATCTATTACTACACTACTTCTATACATTGATGGGAGAGCGTCTCACTGCCCGTGTGCGTTTATTAATGTTCTCAGCTATTCTCAACAATGAAGTTGCATGGTTTGATATGGATGAGCACAACACAGGCTCACTAACGGCCATGCTAGCTGCGGATGCAACATTAGTAAGAAGTGCTCTAGCTGACAGACTCTCAACCATTGTTCAAAATGTAGCTCTCACTGTAACAGCTTTTGTTATTGGCTTCACATTGAGTTGGAAACTAACAGCAGTGGTTGTAGCCTGCCTTCCCCTTCTCATAGGAGCTTCTATTACTGAGCAACTATTTCTCAAGGGGTTTGGAGGAGACTATGGCCATGCTTACTCTAGAGCAACTTCTTTGGCTCGTGAAGCTATTGCCAACATACGTACCGTTGCTGCTTTTGGCGCAGAAGATCGAATCTCAATCCAGTTTGCATCTGAACTGAACAAACCCAACAAACAAGCTCTTCTACGTGGCCACATATCAGGTTTTGGCTATGGCATAACACAGCTATTGGCTTTCTGTTCCTATGCACTTGGCCTTTGGTATGCATCAGTATTAATCAAGAAGAATGAGTCAAATTTTGGAGACATCATGAAGTCCTTCATGGTCTTAATCATCACTTCTCTGGCAATAGCAGAAACACTAGCTCTTACCCCAGACATTGTGAAGGGATCACAAGCATTGGGATCAGTTTTTGGCATTATCCAAAGGAGAACAGCCATCACCCCAAATGACCCCAACTCAAAGATGATAACTGATGTCAAAGGAGAGATAGAGTTTAGAAATGTTAGCTTCAAGTACCCTATGAGACCTGATATCACCATATTTCAGAACTTAAACCTCATAGTCCCAGCAGGTAAGAGTCTGGCAGTAGTGGGGCAAAGTGGTTCAGGGAAAAGCACAGTGATTTCTTTGGTAATGAGATTTTACGACCCCGATTTGGGGTCAGTCCTAATAGATGAATGTGATATCAAAAGCCTAAACCTTAGATCCTTAAGGCTGAGAATAGGATTGGTTCAGCAAGAACCTGCTTTGTTCTCAACCACAGTTTATGAAAACATCAAGTATGGAAAAGAGGAGGCATCAGAAATAGAGGTAATGAAGGCAGCCAAAGCAGCAAATGCTCATGAATTCATTAGCAGAATGCCAGAAGGGTACAAAACTGAGGTTGGTGAGAGAGGGGCGCAGTTGTCAGGAGGACAAAAACAAAGAGTGGCAATTGCTAGAGCTATTCTGAAAGATCCATCCATTCTTTTGTTGGATGAAGCAACAAGTGCACTAGACACAGTATCAGAGAGGCTGGTCCAAGAGGCTCTTGATAAGCTTATGGAAGGTAGAACAACTATTTTAGTAGCTCACAGGCTATCAACTGTTCGCGATGCCGACAGCATTGCAGTGCTTCAAAATGGCAGGGTTGCTGAAATGGGAAGCCATGAGAGGCTGATGGCCAAACCTGCAAGCATCTACAAGCAATTGGTTAGTCTACAGCATGAAACACGTGACCAACAAGACCATTGA 3753 0.4295 MAEVELAPDSLIEQNVTSKTVQQSKTDSVSFFGLFAAADATDCVLMFLGSVGSCVHGAALPVFFILFGRMIDSLGHLSNNPHKLSSRISEHALYLVYLGGVVLVSAWMGVAFWMQTGERQTARLRLKYLQAVLKKDINFFDNEARDANIIFHISSDAILVQDAIGDKTGHAIRYLSQFIVGFAIGFTSVWQLTLLTLAVVPLIAVAGGAYTIIMSTLSEKGEAAYAEAGKVAEEVISQVRTVYSFVGEEKAAGSYSKSLDNALKLGKKGGFAKGVGVGFTYGLLFCAWALLLWYASILVRHHKTNGGKAFTTIINVIFSGFALGQAAPNLGSIAKGRVAAANIMNMIASASRNSKKLDDGNIVPQVAGEIEFCEVCFAYPSRSNMIFEKLSFSVSAGKTIAVVGPSGSGKSTIVSLIQRFYDPTSGKILLDGYDLKNLQLKWLREQMGLVSQEPALFATTIAGNILFGKEDADMDKVIQAAMAANAHSFIQGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKVLLLDEATSALDAESELIVQQALEKIMSNRTTIVVAHRLSTIRDVDTIVVLKNGQVVESGTHLELMSNNGEYVNLVSLQASQSLTNSRSISCSESSRNSSFREPSDNLTLEEPLKLDTAAELQSRDQHLPSKTTSTPSILDLLKLNAPEWPYAILGSVGAILAGMEAPLFALGITHILTAFYSPQGSKIKQEVDWVAFIFLGVAVITIPIYLLLHYFYTLMGERLTARVRLLMFSAILNNEVAWFDMDEHNTGSLTAMLAADATLVRSALADRLSTIVQNVALTVTAFVIGFTLSWKLTAVVVACLPLLIGASITEQLFLKGFGGDYGHAYSRATSLAREAIANIRTVAAFGAEDRISIQFASELNKPNKQALLRGHISGFGYGITQLLAFCSYALGLWYASVLIKKNESNFGDIMKSFMVLIITSLAIAETLALTPDIVKGSQALGSVFGIIQRRTAITPNDPNSKMITDVKGEIEFRNVSFKYPMRPDITIFQNLNLIVPAGKSLAVVGQSGSGKSTVISLVMRFYDPDLGSVLIDECDIKSLNLRSLRLRIGLVQQEPALFSTTVYENIKYGKEEASEIEVMKAAKAANAHEFISRMPEGYKTEVGERGAQLSGGQKQRVAIARAILKDPSILLLDEATSALDTVSERLVQEALDKLMEGRTTILVAHRLSTVRDADSIAVLQNGRVAEMGSHERLMAKPASIYKQLVSLQHETRDQQDH* 1251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g1860 1250 ProSitePatterns ABC transporters family signature. 1142 1156 IPR017871 GO:0005524
Gso14g1860 1250 SMART AAA_5 396 582 IPR003593 -
Gso14g1860 1250 SMART AAA_5 1030 1216 IPR003593 -
Gso14g1860 1250 CDD ABC_6TM_Pgp_ABCB1_D1_like 46 343 - -
Gso14g1860 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 370 605 IPR003439 GO:0005524
Gso14g1860 1250 CDD ABC_MTABC3_MDL1_MDL2 370 606 - -
Gso14g1860 1250 Gene3D ABC transporter type 1, transmembrane domain 33 968 IPR036640 GO:0005524|GO:0016021
Gso14g1860 1250 CDD ABC_MTABC3_MDL1_MDL2 1003 1241 - -
Gso14g1860 1250 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 548 1241 IPR039421 -
Gso14g1860 1250 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 452 567 IPR039421 -
Gso14g1860 1250 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 31 472 IPR039421 -
Gso14g1860 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 681 968 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso14g1860 1250 PANTHER ABC TRANSPORTER B FAMILY MEMBER 13-RELATED 452 567 - -
Gso14g1860 1250 PANTHER ABC TRANSPORTER B FAMILY MEMBER 13-RELATED 31 472 - -
Gso14g1860 1250 PANTHER ABC TRANSPORTER B FAMILY MEMBER 13-RELATED 548 1241 - -
Gso14g1860 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 992 1241 IPR027417 -
Gso14g1860 1250 ProSitePatterns ABC transporters family signature. 508 522 IPR017871 GO:0005524
Gso14g1860 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1003 1239 IPR003439 GO:0005524
Gso14g1860 1250 SUPERFAMILY ABC transporter transmembrane region 669 981 IPR036640 GO:0005524|GO:0016021
Gso14g1860 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 362 606 IPR027417 -
Gso14g1860 1250 SUPERFAMILY ABC transporter transmembrane region 42 343 IPR036640 GO:0005524|GO:0016021
Gso14g1860 1250 CDD ABC_6TM_Pgp_ABCB1_D2_like 670 986 - -
Gso14g1860 1250 Gene3D - 993 1250 IPR027417 -
Gso14g1860 1250 Gene3D - 360 612 IPR027417 -
Gso14g1860 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 47 335 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso14g1860 1250 Pfam ABC transporter 1022 1170 IPR003439 GO:0005524
Gso14g1860 1250 Pfam ABC transporter 388 536 IPR003439 GO:0005524
Gso14g1860 1250 Pfam ABC transporter transmembrane region 47 319 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso14g1860 1250 Pfam ABC transporter transmembrane region 682 954 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g1860 Gso-Chr14 51034002 51039507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g1860 22 1247 Calmodulin-binding Proteins AT2G36910 49.560 0.0 1208