Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g1809 ATGGGAAGGCAACCTTGTTGTGACAAAGTTGGGTTGAAGAAGGGGCCATGGACTGCAGAGGAGGATAAGAAGCTCATAAGCTTCATCCTCACTAATGGCCAATGTTGCTGGAGAGCTGTTCCTAAGCTAGCAGGACTATTAAGGTGTGGGAAGAGTTGCAGGCTGAGGTGGACAAATTACTTGAGGCCAGACTTAAAGAGAGGCCTTTTATCTGAATATGAAGAAAAAATGGTCATTGATCTTCATGCTCAACTTGGCAATAGATGGTCCAAGATTGCTTCTCATCTCCCTGGAAGAACTGATAATGAGATAAAAAACCATTGGAACACCCACATAAAGAAAAAGCTCAAGAAAATGGGCATTGATCCTGTCACACATAAGCCACTCCCTAATGCAACAGAACAAACAAAAAATCAAACCAAACAAGAACAACAACTACACCACCAACCAGTAGAAGAAGAGCAGAACCAACAACCTTTGCAAGTTGACTTTGACCCCAAAGATGACCCAAATAAGGAGCCAGAGACTTCACTGGAGTCATCAACCATCACAGAAGAAGCCATATTGGAAGACCAAATCATCACACCCCTATTTGACAAAATGGAGCTAATGAATGGTTTCTGCACGGATGAAGTTCCAATAATTGAACCTGATGAGATTCTAATGCCTTGTGGACCTTCCTCTTCATCCACTTCTTCTTCATCTTCTTCAAATTCAACCATTTTCCTTGAAGACTTGCAGCTACCAGATTTTGAATGGTCTTGTAATTACAATGATAATAGTACTACTACCCACAACAACAACAACAACAACAACAGCAGCAGCAGCAGCATGGACTTGTGGGATGAAGACATTATTGGCAAACTTAATTGGCTGATTAATGAAGATGATGATAGTGATATTGAAAACCAAGTGTTTGATGCTTCTCTCACTCAGTTCTCAAAAATGTTCATGGATTCAGAATCTTGGGCATATGGCTTGTTTTGA 987 0.4083 MGRQPCCDKVGLKKGPWTAEEDKKLISFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPVTHKPLPNATEQTKNQTKQEQQLHHQPVEEEQNQQPLQVDFDPKDDPNKEPETSLESSTITEEAILEDQIITPLFDKMELMNGFCTDEVPIIEPDEILMPCGPSSSSTSSSSSSNSTIFLEDLQLPDFEWSCNYNDNSTTTHNNNNNNNSSSSSMDLWDEDIIGKLNWLINEDDDSDIENQVFDASLTQFSKMFMDSESWAYGLF* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g1809 328 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso14g1809 328 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gso14g1809 328 CDD SANT 16 61 IPR001005 -
Gso14g1809 328 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 301 - -
Gso14g1809 328 MobiDBLite consensus disorder prediction 119 184 - -
Gso14g1809 328 Gene3D - 70 157 - -
Gso14g1809 328 PANTHER MYB TRANSCRIPTION FACTOR 1 301 - -
Gso14g1809 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso14g1809 328 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso14g1809 328 CDD SANT 74 112 IPR001005 -
Gso14g1809 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gso14g1809 328 SMART sant 66 114 IPR001005 -
Gso14g1809 328 SMART sant 13 63 IPR001005 -
Gso14g1809 328 MobiDBLite consensus disorder prediction 129 162 - -
Gso14g1809 328 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Gso14g1809 328 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso14g1809 328 Gene3D - 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g1809 Gso-Chr14 50461281 50463641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g1809 1 328 MYB Transcription Factor Family AT5G16600 46.218 3.64e-101 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso14g1809 Myb_DNA-binding 1.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g1809 K09422 - gmx:100800494 615.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1809 14 50461281 50463641 Gso18g0359 18 3448160 3450656 PCT
Gso14g1809 14 50461281 50463641 Gso13g1254 13 27772583 27775097 PCT