Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g1799 ATGGATTTCCCTCCATACTGTCGATCCCAATTGCGTAGCAACACTTACCGTGCCCTCGTTCACCTCCTCTCTCACATTTCTGCTTACAACGCTTCAATTCTTGAAGCTTCAACTCAACCCGTCAACATTCCGGATAATGGCAGTGGTAGAATGGATCAAGAAAACCAGGAAAAGGAGCCTAAGTGCTCCGAAGTTGTTGATTCTGATTTTTTGGATCCCAAGGATCCTATATGCCAGAAGGATATACCGGAGGTCCAGGAAACCATTGAGGGGGTTGAAGACAAGGATATGGATTTTACTTCTAACAAGATGGTCCTAGATGATATAGAACATATGATGGGAATAGAGGACTTGTCTACCCAAGCAAATGGTTTTGATAAGGAGCAAAAGCTAATGAATGAGTTTGAGCAGGTTATGAAAGGAACTGAGGATCTTATTTGTGATAGTGAATTAATCCCCTTGAACTTGGGATTGGATAAGACACGTAGTGATGGTGGTGAAGTTGAGTTGATGGATTACCAATCAGAAGTGGAGGAAGGAGAAATTTCTGGAGACTTGGGAATAGATGGCAATTTATTTGATGTGGCTTCTGCAGATGCTTTAATATTACGACAGATGGAAGTAGATGAGGTTCAGAAGCCTGAAAATGTAACTGGAAACATGATATATCCTTCTAAGATTGAGAATCAAGAAAAGGAAAAAGGCTATGACTCTAAATCCTCTTTGGTAAATGCATTTCAAGATTACAATAATAATGGACAAGTGGAGCCTAGAACTAGTGGCAAGAAAGGGATTGTATGTGGAGTTGAAGTAGCAATTTCTAAAGAAACTATTGAATGTCAGAAGGAAGATAAAACAAAGTTGGATAATGCCAGTAAAAAGAATAAGCGTGGTGGGAACAAAGGAAAAAAGAAGAAAGCAGATAGAAAGAAGAGAGCAGAAAAGAACAAACAACTAGGTGTTAAAAGATTGCAGTTACAGCATGTGCAGAAACCAAAAGTTGTCTCACATTGTCGCCATTATCTCAATGGAAGGTGCCATGAGGGTGACAAGTGTCAGTTTTCACATGATGTAGTGCCTCTAACAAAATCCAAGCCGTGTACTCACTTTGCTCGTCATTCTTGCATGAAAGGGGATGATTGCCCATTTGATCACCAGCTCTCAAAATATCCTTGTACCAATTTTGTGTCCAAAGGCTCTTGTTATAGAGGTGATGCTTGCTTGTTTTCTCACCAGGTATCAACGAAAGAAGACATCCCTACAGCTTCAAATATGTGCAGACCAGAGTTGTCTCCACTTCTGTCTGGAAATGCAAATTCCAGCACACCACTTAACAACAATCATGGCTCTACTCCTGTCCAGCAAAACCACTTAACTAATTCTGCAGGAATTCATTCTTGCACCAGTGTTGAACATAAAGTGATAAACACTGTACAGAAACAGCCTACACCACCTAAAGGAATTAGTTTCATCAATCTTGCTAAATTATCACCCAGCCTTAGTTCTCTGAAACAAAGCACAGTAACAACCAAGGGAAGTCCTGTACAAATTGGGACCCATGAAGATCAAAGTTCATTTCACAAAACTCAAAACAAGGTGGACATTCCTAAGAAATTGCCAGCTGTGACACCTAAGGGAATAAACTTTCTTTCTTTTGGCAAAGGCTCTGTCTGCAGTTTTAAAAGTGTGAATAGGGAAAATGGTATCAAGTTGCCTCAGTTATTCAATTTTGGTTTGCCTGAGCAGGAAAAATCCTCTCTAAACAAAGATGATTACAACAAAGCTAGTGACACCACAAAACAAAATGCACCACAGACTGATATATTCTTAACTGAGATTTTAGGAAAAAATCAATCTGTGGCAGAAGAAATGAAATTAAAACTTCCAGAGAAAACCTCCGTAGATTTTTTTATGAGGGATCACAGCCATAGTAAATCAGTTCAAGAGGGGAAGAAGTCATCTGATAATTCTCAAAGTTCAAAGGGCCAAAAGGCACTCTTATCAACTCTAGCATTTGCAGCTGAGCATGAATCTAGCATTAAGATGAAATACCCTACTGGTGGTTTGCCGATGTCATCAGAGGACTCAGAGAGAATGTTTTGTTGA 2106 0.396 MDFPPYCRSQLRSNTYRALVHLLSHISAYNASILEASTQPVNIPDNGSGRMDQENQEKEPKCSEVVDSDFLDPKDPICQKDIPEVQETIEGVEDKDMDFTSNKMVLDDIEHMMGIEDLSTQANGFDKEQKLMNEFEQVMKGTEDLICDSELIPLNLGLDKTRSDGGEVELMDYQSEVEEGEISGDLGIDGNLFDVASADALILRQMEVDEVQKPENVTGNMIYPSKIENQEKEKGYDSKSSLVNAFQDYNNNGQVEPRTSGKKGIVCGVEVAISKETIECQKEDKTKLDNASKKNKRGGNKGKKKKADRKKRAEKNKQLGVKRLQLQHVQKPKVVSHCRHYLNGRCHEGDKCQFSHDVVPLTKSKPCTHFARHSCMKGDDCPFDHQLSKYPCTNFVSKGSCYRGDACLFSHQVSTKEDIPTASNMCRPELSPLLSGNANSSTPLNNNHGSTPVQQNHLTNSAGIHSCTSVEHKVINTVQKQPTPPKGISFINLAKLSPSLSSLKQSTVTTKGSPVQIGTHEDQSSFHKTQNKVDIPKKLPAVTPKGINFLSFGKGSVCSFKSVNRENGIKLPQLFNFGLPEQEKSSLNKDDYNKASDTTKQNAPQTDIFLTEILGKNQSVAEEMKLKLPEKTSVDFFMRDHSHSKSVQEGKKSSDNSQSSKGQKALLSTLAFAAEHESSIKMKYPTGGLPMSSEDSERMFC* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g1799 701 MobiDBLite consensus disorder prediction 511 530 - -
Gso14g1799 701 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 161 694 IPR045124 GO:0003723|GO:0045892
Gso14g1799 701 MobiDBLite consensus disorder prediction 39 59 - -
Gso14g1799 701 Pfam CCCH-type zinc finger 337 357 IPR041367 -
Gso14g1799 701 MobiDBLite consensus disorder prediction 283 319 - -
Gso14g1799 701 ProSiteProfiles Zinc finger C3H1-type profile. 332 359 IPR000571 GO:0046872
Gso14g1799 701 PANTHER PROTEIN SUPPRESSOR OF SABLE 161 694 - -
Gso14g1799 701 SUPERFAMILY CCCH zinc finger 333 357 IPR036855 GO:0046872
Gso14g1799 701 MobiDBLite consensus disorder prediction 682 701 - -
Gso14g1799 701 SUPERFAMILY CCCH zinc finger 390 417 IPR036855 GO:0046872
Gso14g1799 701 Gene3D - 362 426 - -
Gso14g1799 701 SMART c3hfinal6 331 358 IPR000571 GO:0046872
Gso14g1799 701 SMART c3hfinal6 361 387 IPR000571 GO:0046872
Gso14g1799 701 SMART c3hfinal6 389 413 IPR000571 GO:0046872
Gso14g1799 701 MobiDBLite consensus disorder prediction 297 312 - -
Gso14g1799 701 Gene3D - 297 361 - -
Gso14g1799 701 MobiDBLite consensus disorder prediction 641 662 - -
Gso14g1799 701 ProSiteProfiles Zinc finger C3H1-type profile. 361 388 IPR000571 GO:0046872
Gso14g1799 701 ProSiteProfiles Zinc finger C3H1-type profile. 391 414 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g1799 Gso-Chr14 50332165 50336975 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso14g1799 zf-CCCH_4 3.2e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g1799 - - gmx:100816509 1365.9