Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g1794 ATGTCTTTCGCTCTGATCGAAGCCTGCAAGAAGCGTAAACGGTTGCCGAAGTTTTTCAGGTTCAACTCGTTCGGCGACCCTGGTGTTGTTCCAATTGCACCTTCGGGTCCCTTTCGCGATAACGTTCGCGTTTTCCTTCAAAATGCTGGCGAACTCGAAGGTTACACTGTCTCCGGGAACCCCTTATGGTGCATCCTTCTCATCCACGACAACTCAAACGCTATGGCTCCTCTTTACACCATCGAAGAACACGTCGACCACTCTTCCCACCCCTTCTGCGATCACTGCCGCTGCGTAGGTTGGAGTGGACATTTTGTACCAAAGAGAAGGTATCATTTTATAATCCCCATGGACAATGGGTGGCATAAACCCTTAGATGAAGATTCAATAGACAATCAGAAGCATCTGTTGCATGGAGTGATTCATTGCAATGGGTATGGGCATTTGCTTTGTGTCAATGGCATTGAAGGAGGCTCCAAGATTCTTAGTGGCAGAGAGATCATCGATCTTTGGGATAGGATATGCACAAACCTCCGAGCGAGGAAAATTGCTGTGGAAGATGTTTCTTGTAAGAGGTCTATGGATCTTCGCTTACTTCATGGAGTTGCTTATGGACACTCCTGGTTTGGTAGGTGGGGTTATAGGTTTTGCCGTGGAAGCTCTGGAGTGAGAGAGCGAGAATACAATGAAGCAATGACAATGCTTGGTTCCTTGGGGCTTGACATGATTGTAAAAGATTTGAGCGAGACAAAGTACAAGACAGAAATCCAGCAAATTATTCGGTGCTATAGAGATATGAGTGAGACTCATATTATCTCACTCAGGGATCTTCTAAGGTTTATGCTTACTGTCAAGTCTTCTCGTGCTCCTGTGCCTAAGATAACAGACACTTATTCTGCTGCTTCTGATTCTACTTCTTCAGCGTTAACCTCAAGAAATTCAACCAAACACACACTTCCAAACAGATCAAATTCCATGAAGGAAAAATCTGTGAGGTACAAGAAGTTCAGTAGTGCAGTGACTAACATGGATAGCAGATGGCCCACAAGGAGACTAGAGTTTGCAGCTCAAGTGATTGTGGATGCACTGAAAGAGAACAAGACTGTGAAACTAGGCTCAGGTGGGATGACAAGGCAAGATGTGAGAGATGCAGCTAGACTACACATTGGGGACACAGGCTTACTTGACTATGTGCTTAAGTCACTCAACAATGTGATTATTGGAAACTACGTTGTTCGTCGCATGGTGAATCCATCAACTAGAATCCTAGAGTACACTATTCATGATCTTGGCAAGGGGTCCAAAGCCCCTGAAGAGAACAAGCCTGAGGTGATGGCTCATGCAGATCAACAAGCAGTAGAGTCATCTTGGATGCTTGGTAATGATGTGTACAGTGATGCATTGTTTTTGTACAAGAATGTGCTATTGGGTTACCCTGATTCGGAAGCTGTTGACACAGCAGTTCAGACAATTCTAGACAGCAGATACTTTGTGAAGGAGTGGCCAGTGAGGGATGAAATGAAGGAGCAGGTATTGACATTCATTTGCCGCTTGCAACCAAATTTTGTGGACAAAAAACATGAGCTGAAGGGTCTAGCATGTGGTGAAGTTGTGGTGGTTCCACTGCATGCAACAGTTGGGGACTTGAAGAGAGCTGCTGAGGCTGCTCTGAGGGACACTTACTGCATTGCAGAGAGGCTTATAGTGACAGACATTAAGGAACTCATGGATGTGAGTGATGAGGAAGTGTTGTTTGGACTAATCCAATCTGGTGTGGAACTTTGTGTGAGGGGAATTGCTATTGATTTATTGACCCCTTTGAAGTATCAGGGTGAATCTGAGTCTGCTGATAACTGGAAGGTGAGGTGTGAGTGTGGAGCTCAAGATGATGATGGGGAGAGAATGGTGGCTTGTGACATTTGTGAAGTGTGGCAGCACACTCGGTGCTATGGCATTGATGATTCTGAGACAGTGCCACCACTGTTTGTGTGCACTGGTTGCTGTGACTCAGTACTAGTACCTTCTTCAAGGACTGAATCAGCAGCCTTTGGTGTGGATTCTGCTGATTCTTTTCTCCTTTCAGAAGACCCCACTACCCTTTTACTAGATTACGAGTATGGATACTAA 2127 0.4523 MSFALIEACKKRKRLPKFFRFNSFGDPGVVPIAPSGPFRDNVRVFLQNAGELEGYTVSGNPLWCILLIHDNSNAMAPLYTIEEHVDHSSHPFCDHCRCVGWSGHFVPKRRYHFIIPMDNGWHKPLDEDSIDNQKHLLHGVIHCNGYGHLLCVNGIEGGSKILSGREIIDLWDRICTNLRARKIAVEDVSCKRSMDLRLLHGVAYGHSWFGRWGYRFCRGSSGVREREYNEAMTMLGSLGLDMIVKDLSETKYKTEIQQIIRCYRDMSETHIISLRDLLRFMLTVKSSRAPVPKITDTYSAASDSTSSALTSRNSTKHTLPNRSNSMKEKSVRYKKFSSAVTNMDSRWPTRRLEFAAQVIVDALKENKTVKLGSGGMTRQDVRDAARLHIGDTGLLDYVLKSLNNVIIGNYVVRRMVNPSTRILEYTIHDLGKGSKAPEENKPEVMAHADQQAVESSWMLGNDVYSDALFLYKNVLLGYPDSEAVDTAVQTILDSRYFVKEWPVRDEMKEQVLTFICRLQPNFVDKKHELKGLACGEVVVVPLHATVGDLKRAAEAALRDTYCIAERLIVTDIKELMDVSDEEVLFGLIQSGVELCVRGIAIDLLTPLKYQGESESADNWKVRCECGAQDDDGERMVACDICEVWQHTRCYGIDDSETVPPLFVCTGCCDSVLVPSSRTESAAFGVDSADSFLLSEDPTTLLLDYEYGY* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g1794 708 ProSitePatterns Zinc finger PHD-type signature. 623 667 IPR019786 -
Gso14g1794 708 MobiDBLite consensus disorder prediction 302 327 - -
Gso14g1794 708 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 608 671 IPR013083 -
Gso14g1794 708 MobiDBLite consensus disorder prediction 302 326 - -
Gso14g1794 708 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 10 675 - -
Gso14g1794 708 SUPERFAMILY FYVE/PHD zinc finger 612 672 IPR011011 -
Gso14g1794 708 Pfam PHD-finger 622 668 IPR019787 -
Gso14g1794 708 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 10 675 - -
Gso14g1794 708 SMART PHD_3 622 668 IPR001965 -
Gso14g1794 708 CDD PHD_MMD1_like 623 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g1794 Gso-Chr14 50268221 50271766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g1794 10 676 PHD Transcription Factor Family AT5G22260 34.225 1.20e-116 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gso14g1794 PHD 1.9e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g1794 - - gmx:100813850 1422.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1794 14 50268221 50271766 Gso2g2071 2 45304725 45308015 GST