Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g1793 ATGGTTTTGTCATGGACAAAAGGGAGAGTGTTCCGGCGTGCCAGAAAGGGTAAGGAGTTGAAATATTCTGGTGGCGACATGGAGATAGAGATTGCGATCCCCACCCACTTCCGGTGCCCGGTAACCTTGGACATGATGAAGGACCCCGTGACCGTTTCCACGGGCATAACCTATGACCGCGACAGCATCGAGAAGTGGATCGAGTCCGGGAACCGCACGTGCCCGGTCACCAAAACCGAGCTGACCAGCCTCGACGACATGATCCCGAACCACGCCATCCGTAGGATGATCCAGGACTGGTGCGTGGAGCACCGCTCCCACGGCATCGAACGGATCCCCACTCCTCGTATCCCCGTCACCCCGTACGAGGTTGCCGACACGTGTACGAGGATCCTGTCGGCGGCGCAGCACGGCGACGAGAACAAGTGCGTGGAGTTGGTGAGGAAGATCAAGGCTTGGGGGAAGGAAAGTGAGAGAAACAAAAGGTGCATAGTGGCCAATGGTGCTGCTTTAGCACTATCCAATGCCTTCAACTCTTTCTCATCACGTGGGTTGTTGATTGAGAAGAACGTGGTTGTGTTGGATGAGATTCTGGGGGCTTTGGTATGGATGCGTCCTCTTTCTGAAGAGGGTAGATCCGTGTTGGGGTCAACGAGTTCTATCTCTTGCATGGTTTGGTTCATGAACGGTAAACAATTGTCCACAAGGCAAAACGCTGCTTTGGTTCTTAAGGAAATGCATGTTGAGGCGTTGGTGAAGTGTGTAGATGTTGTTGAGGCTTTGGTTAACATGATTAAGGAGCCTGTTGGGAATGGTTCCACCAAGCCGTGTTTGTCAACGATTTTCAACTTGGTTAGTTATTCTTCAGTTAGAGGTGTGACTTGTGAAAGGTTTGTGGAATTGGGTTTGGTTGATGCGGTGTTGGAGGTTCTTGTTGATGCGGAGAGAGGGGTGTGTGAGAAGGCTTTGGGGGTGTTGGATTGCGTTTGTGATTGCAAGCAAGGGGTGCAGATGGCAAAGGCTAATGCTTTGACTTTGCCTCTTGTGATTAAGAAGCTTTTGAGGGTGTCTGAGTTGAGTTCAAGCTTTGCGGTTTCGGTTCTTTGGAAACTTTTTTGTGACAAGAATGAAGAAGGGGTGTTGATTGAGGCGCTTCAAATGGGAGTGTTTCATAAACTACTTGTTTTGTTGCAAGTGGGTTGTGGTGAGGGAACCAAAGAGAAGGCTACGGAGTTGTTGAAGTTGTTGAATGGTTGTAGGAGCAAAGCCGAGTGTGTTGATTCGTCCTTGGATTTCAAGCATTTGAAGAAGCCCTTCTAA 1320 0.4985 MVLSWTKGRVFRRARKGKELKYSGGDMEIEIAIPTHFRCPVTLDMMKDPVTVSTGITYDRDSIEKWIESGNRTCPVTKTELTSLDDMIPNHAIRRMIQDWCVEHRSHGIERIPTPRIPVTPYEVADTCTRILSAAQHGDENKCVELVRKIKAWGKESERNKRCIVANGAALALSNAFNSFSSRGLLIEKNVVVLDEILGALVWMRPLSEEGRSVLGSTSSISCMVWFMNGKQLSTRQNAALVLKEMHVEALVKCVDVVEALVNMIKEPVGNGSTKPCLSTIFNLVSYSSVRGVTCERFVELGLVDAVLEVLVDAERGVCEKALGVLDCVCDCKQGVQMAKANALTLPLVIKKLLRVSELSSSFAVSVLWKLFCDKNEEGVLIEALQMGVFHKLLVLLQVGCGEGTKEKATELLKLLNGCRSKAECVDSSLDFKHLKKPF* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g1793 439 PANTHER WDSAM1 PROTEIN 5 439 IPR045185 GO:0061630
Gso14g1793 439 SUPERFAMILY ARM repeat 130 403 IPR016024 -
Gso14g1793 439 SUPERFAMILY RING/U-box 28 110 - -
Gso14g1793 439 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 5 439 - -
Gso14g1793 439 CDD RING-Ubox_PUB 37 78 IPR045210 -
Gso14g1793 439 Pfam U-box domain 33 105 IPR003613 GO:0004842|GO:0016567
Gso14g1793 439 ProSiteProfiles U-box domain profile. 32 107 IPR003613 GO:0004842|GO:0016567
Gso14g1793 439 Gene3D - 125 428 IPR011989 -
Gso14g1793 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 111 IPR013083 -
Gso14g1793 439 SMART Ubox_2 36 100 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g1793 Gso-Chr14 50262357 50263968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g1793 20 439 U-box Gene Family AT5G37490 45.199 1.16e-118 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g1793 - - gmx:100795913 855.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1793 14 50262357 50263968 Gso2g2069 2 45294522 45296197 GST
Gso18g0372 18 3619921 3621549 Gso14g1793 14 50262357 50263968 PCT
Gso13g1243 13 27576514 27578234 Gso14g1793 14 50262357 50263968 PCT
Gso14g1793 14 50262357 50263968 Gso18g0372 18 3619921 3621549 PCT
Gso14g1793 14 50262357 50263968 Gso13g1243 13 27576514 27578234 PCT