Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g1778 ATGGCGATACAAGGCCAAAATGCATTTACTAGATCACAGGGTGGTCTTCCAATTGGAGATGAAATATCTTTCAATTCTGGTGTGCATTCTGTTGCAGATATTCCACTACATGATCAGTTATCTTGTGGAAATGACTATGCCTTGAAGGTTAGGAAACCATATACTATCACAAAGCAGAGAGAGAGGTGGACAGATGAAGAACATAAGAAGTTCCTTGAAGCCTTAAAGCTATATGGCAGGGCCTGGCGACGGATTGAAGAACATGTTGGCACAAAGACTGCTGTTCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGATTCTTCGAGAGTCTAGTGGGAACAGTACAACCTTGGAGGAGTCAATTGAAATTCCACCTCCGCGACCAAAACGGAAGCCAATTCATCCTTACCCTCGTAAGCTAGTTGAGTTTCCAAAGACAGGAATTTCCAACTCAGAACACCCACTGAGGTCTAATTCTCTGAAGTCATCAGATTTTGGTCAAGAAAACAATTCTCCCAAGTCAGTTTTATCTACAGTTGTTTCAGAAACTGTTGGTTCCTCCGATTCAGATACATCTAGTCGATGTTTGTCACCAGCCTCATCCATTAGTGGTGTCCCCACAAACAGATTTCCACTTGCTGAGCCCAAAACATCATTTAAGGAAGAAGGGTCTGCACCAAGTTCAGCTCATGATGAGCAACCTCCTGTGAAACTGGAGTTTTTTCACAAAGAAAGTGTTTCTACCAGAGATGATGCAACAGAAGAATCATCTGGTCGTACTCTCAAACTTTTTGGGACCACTCTACTGGTAACAGACACATGCAAACCTTCTTCTCCAACAACGGAGCCGTGCAAACCAACACCTGCGGCTGCAATGTATCTTATGCAACTTCAGAATGGATGTTCAGATGTTACAGAAGGTCATGCTTCTATTGTTCCTTGGTGGACTCTTCCCCACAATACTCCATTTATGCCACTGCACAAGGAGCCAAAAGGGAAGCATCTATATTCTAATCTTGGAGAGTTTGAACATAAAGAAGTTCAAAAGGAAGGATCATGGACTGGTTCAAACACTAGTTCAATTGATGATGGAGATAACACTGAAAAATCAGATGATCAAGCCAAAAGTCATGTACATGGTTTTAGCAAAAGTGAAACTTTAACTATATCTGAGCTAAGGGTGAGGCCTAAAACATGTGGAAAAGGGTTTGTACCATATAAAAGGTGCATGGCAGAGAGGGAAAACCAGTGCTCATCAGTATATTATGAGGAAAGGGAAGAGCAACGTATTAAGCTTTCCTTATAG 1311 0.4165 MAIQGQNAFTRSQGGLPIGDEISFNSGVHSVADIPLHDQLSCGNDYALKVRKPYTITKQRERWTDEEHKKFLEALKLYGRAWRRIEEHVGTKTAVQIRSHAQKFFSKILRESSGNSTTLEESIEIPPPRPKRKPIHPYPRKLVEFPKTGISNSEHPLRSNSLKSSDFGQENNSPKSVLSTVVSETVGSSDSDTSSRCLSPASSISGVPTNRFPLAEPKTSFKEEGSAPSSAHDEQPPVKLEFFHKESVSTRDDATEESSGRTLKLFGTTLLVTDTCKPSSPTTEPCKPTPAAAMYLMQLQNGCSDVTEGHASIVPWWTLPHNTPFMPLHKEPKGKHLYSNLGEFEHKEVQKEGSWTGSNTSSIDDGDNTEKSDDQAKSHVHGFSKSETLTISELRVRPKTCGKGFVPYKRCMAERENQCSSVYYEEREEQRIKLSL* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g1778 436 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 58 107 IPR006447 GO:0003677
Gso14g1778 436 MobiDBLite consensus disorder prediction 116 238 - -
Gso14g1778 436 SMART sant 59 107 IPR001005 -
Gso14g1778 436 PANTHER SWI/SNF COMPLEX-RELATED 30 423 - -
Gso14g1778 436 PANTHER PROTEIN REVEILLE 7-RELATED 30 423 - -
Gso14g1778 436 SUPERFAMILY Homeodomain-like 54 108 IPR009057 -
Gso14g1778 436 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 109 IPR017930 -
Gso14g1778 436 MobiDBLite consensus disorder prediction 366 381 - -
Gso14g1778 436 Gene3D - 62 108 - -
Gso14g1778 436 MobiDBLite consensus disorder prediction 349 381 - -
Gso14g1778 436 ProSiteProfiles Myb-like domain profile. 55 105 IPR001005 -
Gso14g1778 436 MobiDBLite consensus disorder prediction 152 209 - -
Gso14g1778 436 CDD SANT 62 105 IPR001005 -
Gso14g1778 436 Pfam Myb-like DNA-binding domain 60 103 IPR001005 -
Gso14g1778 436 ProSiteProfiles SANT domain profile. 58 109 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g1778 Gso-Chr14 50069456 50073146 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso14g1778 Myb_DNA-binding 1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g1778 - - gmx:778060 840.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1778 14 50069456 50073146 Gso2g2050 2 45105078 45108906 GST