Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g1777 ATGTCCAAAATGCTGGCACTCACAGTATCCATTATCCTCATCATCACACTCTCTTCTTCGCCATTAGTCACCTCTCACTACTCCTCTCCTTCTCTAGAAGCCTCGCCGACCTTCTCCGAATGGCGATCCGCGCGCGCCACCTACTACGCCCCGGCGGATCCCCGCGACGTGGTGGGCGGCGCGTGCGGCTACGGCGACCTGGTCAAGGGCGGCTATGGCATGGCCACTGTGGGCCTCAGCGAGGCGCTGTTCGAGCGCGGCCAGATCTGCGGCGCGTGCTTCGAACTCCGCTGCGTCGAGGACATGCGCTGGTGCATCCCTGGCACCTCCATCATCGTCACCGCCACCAACTTCTGTGCCCCCAACTACGGCTTCACCTCCGACGGCGGTGGACACTGCAACCCTCCCAACAAACACTTCGTTCTCCCCATCGAAGCTTTTGAGAAGATCGCCATTTGGAAAGCCGGCAACATGCCCGTGCAGTATCGCAGGATAAAGTGTAGGAAGGAAGGAGGGATGCGATTCACGGTTACTGGTTCTGGAATCTTCATCTCCGTGCTGATCAGCAATGTTGCTGGCCATGGAGACGTAGTGGAGGTGAAGGTTAAAGGCTCGAGAACTGGTTGGCTTTCAATGGGTCGGAATTGGGGACAAAACTGGCATGTAAATGCGTTGCTGCAAAATCAACCCCTTTCGTTTGAGGTTAAAGCTAGTGATGGAAAAACGGTTACGTCTTACAATGTTGCTCCCAAGGATTGGACCTTTGGACAAACCTTCGAAGGCAAGCAATTTGAGACTTGA 801 0.5543 MSKMLALTVSIILIITLSSSPLVTSHYSSPSLEASPTFSEWRSARATYYAPADPRDVVGGACGYGDLVKGGYGMATVGLSEALFERGQICGACFELRCVEDMRWCIPGTSIIVTATNFCAPNYGFTSDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRIKCRKEGGMRFTVTGSGIFISVLISNVAGHGDVVEVKVKGSRTGWLSMGRNWGQNWHVNALLQNQPLSFEVKASDGKTVTSYNVAPKDWTFGQTFEGKQFET* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g1777 266 Gene3D - 172 264 IPR036749 -
Gso14g1777 266 SUPERFAMILY Barwin-like endoglucanases 34 190 IPR036908 -
Gso14g1777 266 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 182 261 IPR007117 -
Gso14g1777 266 PANTHER EXPANSIN-A15 17 265 IPR002963 GO:0009664
Gso14g1777 266 Pfam Expansin C-terminal domain 173 250 IPR007117 -
Gso14g1777 266 PRINTS Expansin/Lol pI family signature 40 55 IPR007118 GO:0005576
Gso14g1777 266 PRINTS Expansin/Lol pI family signature 58 76 IPR007118 GO:0005576
Gso14g1777 266 PRINTS Expansin/Lol pI family signature 80 98 IPR007118 GO:0005576
Gso14g1777 266 PRINTS Expansin/Lol pI family signature 155 171 IPR007118 GO:0005576
Gso14g1777 266 PRINTS Expansin/Lol pI family signature 209 223 IPR007118 GO:0005576
Gso14g1777 266 PRINTS Expansin/Lol pI family signature 247 261 IPR007118 GO:0005576
Gso14g1777 266 Gene3D - 26 168 IPR036908 -
Gso14g1777 266 PANTHER EXPANSIN-A13 17 265 - -
Gso14g1777 266 SUPERFAMILY PHL pollen allergen 169 261 IPR036749 -
Gso14g1777 266 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 59 172 IPR007112 -
Gso14g1777 266 Pfam Lytic transglycolase 77 162 IPR009009 -
Gso14g1777 266 PRINTS Expansin signature 71 85 IPR002963 GO:0009664
Gso14g1777 266 PRINTS Expansin signature 98 109 IPR002963 GO:0009664
Gso14g1777 266 PRINTS Expansin signature 111 121 IPR002963 GO:0009664
Gso14g1777 266 PRINTS Expansin signature 130 147 IPR002963 GO:0009664
Gso14g1777 266 PRINTS Expansin signature 147 160 IPR002963 GO:0009664
Gso14g1777 266 PRINTS Expansin signature 171 183 IPR002963 GO:0009664
Gso14g1777 266 PRINTS Expansin signature 183 204 IPR002963 GO:0009664
Gso14g1777 266 PRINTS Expansin signature 218 239 IPR002963 GO:0009664
Gso14g1777 266 PRINTS Expansin signature 247 263 IPR002963 GO:0009664
Gso14g1777 266 SMART dpbb_1 76 162 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g1777 Gso-Chr14 50062289 50064628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g1777 40 266 Expansin Gene Family AT3G03220 84.581 2.60e-149 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g1777 - - gmx:100809568 536.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1777 14 50062289 50064628 Gso2g2049 2 45099317 45101576 GST
Gso18g0391 18 3881773 3884638 Gso14g1777 14 50062289 50064628 PCT
Gso14g1777 14 50062289 50064628 Gso18g0391 18 3881773 3884638 PCT