Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g1771 ATGGAGCAGGAACACCCAAACCTTGAAAGCTTCTTATCATGGGCAGCACAGCTTGGAATATCAGACTCAACAACACGCACCAACCAACCTCAGCACTCTCTTTCCTCATGTTTGGGTTCTTCTCTATCTGTCTCTCATTTTCCTCACACTGGCGGGAGAGGTTTGGGTGCTGTGAGAGACCTTAGGAGGGGAGAGATTGTTCTCAGAGTTCCAAAATCTGCTTTAATGACAAGAGAGACTGTTATGGAAGATAAAAAGCTCTGTGATGCTGTCAATAGACACTCTTCTCTCTCCTCAGCTCAGATATTGATTGTTTGCTTGTTGTATGAAATGGGTAAAGGAAAGACTTCAAGGTGGCATCCTTACCTCATGCATTTGCCACACACTTATGACGTACTAGCCATGTTTGGTGAATTTGAGAAGCATGCTCTGCAAGTGGATGAGGCAATGTGGGTCACAGAAAAAGCCATGCTTAAAGCCAAATCAGAGTGGAAAGAAGCTCATTCTCTGATGCAAGATCTCATGTTTAAGCCTCAGTTTTTTACATTTAAGGCTTGGGTTTGGGCTGCTGCAACGATATCTTCCCGGACATTGCATATCCCGTGGGATGAAGCTGGGTGTTTATGCCCTGTGGGTGACTTGTTTAATTATGATGCACCTGGAATAGAACCATCTGGCATTGAGGATTTAGATCGTTTGCTATCTAACACTTCCATCCCTGATACTATCGTATTGAATGGAGACAAGAATATTATGGTAGATGCAGAACAGCTTGATTCACACTCTTGGAGATTAACAGATGGCGGGTTTGAGGAAGATGCTAATGCATATTGCTTTTATGCTCGGGAACATTACAAGAAAGGAGATCAGGTTCTATTATGCTATGGAACTTACACAAATTTGGAGCTTCTTGAACACTATGGGTTTCTCCTACAAGAAAATCCAAATGACAAAGTTTTTATCCCTTTGGAACCTGCTTTATATTCTTCCACTTCATGGTCTAAGGAATCACTCTACATCCATCACAATGGGAAGCCTTCCTTTGCACTACTAGCTGCATTGCGGCTGTGGGCAACCCCTCAAAGCAGGAGGAGGTCAGTTGGACATCTTGTGTATTCTGGTTCTCGAGTTTCTACAGACAATGAAATTTTCATCATGAAATGGCTGTCGAAAACTTGTGATGCTGTGTTAAGGAATCTGCCAACATCTCTTGAGGAAGACACTTTTCTCCTCAATGCAATGGACAATAGTCAAGATTTTTCAACTTTCATGGAGATCACAAAGTTAGTGTCTTCCAGAGATGAGACTTGTACCTTCTTAGAAACTCATAATATGAAGGATACTCATAGTTTTACGGATGTAATTTTATCTAGAAAAGCAAGAAGGTCCATGGACAGGTGGAAATTAGCTGTCCAATGGAGGCTCAAGTATAAGAAAGTCATTTTTGATTGCATCACTTATTGCAACAAAATACTGGATTCTTTATTAAAATAA 1494 0.4123 MEQEHPNLESFLSWAAQLGISDSTTRTNQPQHSLSSCLGSSLSVSHFPHTGGRGLGAVRDLRRGEIVLRVPKSALMTRETVMEDKKLCDAVNRHSSLSSAQILIVCLLYEMGKGKTSRWHPYLMHLPHTYDVLAMFGEFEKHALQVDEAMWVTEKAMLKAKSEWKEAHSLMQDLMFKPQFFTFKAWVWAAATISSRTLHIPWDEAGCLCPVGDLFNYDAPGIEPSGIEDLDRLLSNTSIPDTIVLNGDKNIMVDAEQLDSHSWRLTDGGFEEDANAYCFYAREHYKKGDQVLLCYGTYTNLELLEHYGFLLQENPNDKVFIPLEPALYSSTSWSKESLYIHHNGKPSFALLAALRLWATPQSRRRSVGHLVYSGSRVSTDNEIFIMKWLSKTCDAVLRNLPTSLEEDTFLLNAMDNSQDFSTFMEITKLVSSRDETCTFLETHNMKDTHSFTDVILSRKARRSMDRWKLAVQWRLKYKKVIFDCITYCNKILDSLLK* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g1771 497 CDD SET_LSMT 51 310 - -
Gso14g1771 497 Pfam SET domain 52 296 IPR001214 GO:0005515
Gso14g1771 497 Gene3D set domain protein methyltransferase, domain 1 5 308 - -
Gso14g1771 497 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 306 418 IPR036464 -
Gso14g1771 497 PANTHER PROTEIN SET DOMAIN GROUP 40 4 482 - -
Gso14g1771 497 SUPERFAMILY SET domain 6 314 IPR046341 -
Gso14g1771 497 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 4 482 - -
Gso14g1771 497 Pfam Rubisco LSMT substrate-binding 345 480 IPR015353 -
Gso14g1771 497 ProSiteProfiles SET domain profile. 40 296 IPR001214 GO:0005515
Gso14g1771 497 Gene3D - 309 496 IPR036464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g1771 Gso-Chr14 50019653 50023376 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g1771 52 338 NAC Transcription Factor Family AT3G56570 23.392 4.91e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gso14g1771 SET 1.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g1771 - - gmx:100787452 1001.89