Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g1735 ATGTCCGTACACGCAAAACTGAAGCACCACCCCATGAACCTAGCATCCCCAAGTTCCCATTTTGAGGACGACCCACCATGCAAAACCAAGACCAAAACCCAAAGGAGGCTCCTTCGGATCATAATCACCGACCATGACGCCACCGATTCTGACTCCTCCGACGAAGAACAACAGCAGCAGCAACAAAAAACAAGAAGAGTGAACAGAGAAATCACCCAAATCAACATGCAACTTCCTCTATCACATAATAGTTCCTTTTCCCCTTCATCTTCTTATTACTCTTCAGCTTCCACCTCATCGGAACAAAACCTAAAGTGCAAGAGACCCAACAAAAAGCCGCCACCTTCCTCCGCCGAGGCCCGCCGCCGCAACAAGTTCCGCGGCGTCCGGCAGCGGCCGTGGGGGCGGTGGGCGGCCGAGATCCGCGACCCCACCCGCCGGAAACGCCTCTGGCTCGGAACCTTCGACACGGCGGAGGAAGCCGCCACGGAGTACGACAGAGCCGCCGTCAAACTCAAGGGCCCCAACGCCGTCACCAACTTCCCCCTCGCGCCGGAGGCTACGGCGCAGTCTCCACCGCTCGCCGCGGACAACCTCAGCTCCGACGGCGGCGCGTCGTACTCGGACCTAGTGGCCTCGCCGACGTCCGTCTTGGCCTACGAGTGCGACTCGACGCCGTTCGACGGTTTCCGTTATCTCGACGTTGACGCGTTCGGGTTCCACATCGACGCGCCGTTAAGTTTGCCGGAAGTTAACGTTAACGTTGCGCTGACGTGTCATCACGGGAAGAAGCAGGAGGAGGCGTTTGATGAATTCGATCTGGACGAGTTCATGACGTGGCCTTACTAG 849 0.5795 MSVHAKLKHHPMNLASPSSHFEDDPPCKTKTKTQRRLLRIIITDHDATDSDSSDEEQQQQQQKTRRVNREITQINMQLPLSHNSSFSPSSSYYSSASTSSEQNLKCKRPNKKPPPSSAEARRRNKFRGVRQRPWGRWAAEIRDPTRRKRLWLGTFDTAEEAATEYDRAAVKLKGPNAVTNFPLAPEATAQSPPLAADNLSSDGGASYSDLVASPTSVLAYECDSTPFDGFRYLDVDAFGFHIDAPLSLPEVNVNVALTCHHGKKQEEAFDEFDLDEFMTWPY* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g1735 282 MobiDBLite consensus disorder prediction 105 124 - -
Gso14g1735 282 ProSiteProfiles AP2/ERF domain profile. 125 182 IPR001471 GO:0003700|GO:0006355
Gso14g1735 282 SMART rav1_2 125 188 IPR001471 GO:0003700|GO:0006355
Gso14g1735 282 MobiDBLite consensus disorder prediction 23 48 - -
Gso14g1735 282 SUPERFAMILY DNA-binding domain 125 183 IPR016177 GO:0003677
Gso14g1735 282 MobiDBLite consensus disorder prediction 1 129 - -
Gso14g1735 282 PIRSF PTI6 8 282 IPR017392 GO:0003700
Gso14g1735 282 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 30 224 - -
Gso14g1735 282 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 30 224 - -
Gso14g1735 282 Gene3D AP2/ERF domain 124 184 IPR036955 GO:0003700|GO:0006355
Gso14g1735 282 MobiDBLite consensus disorder prediction 64 104 - -
Gso14g1735 282 CDD AP2 125 182 IPR001471 GO:0003700|GO:0006355
Gso14g1735 282 PRINTS Ethylene responsive element binding protein signature 126 137 IPR001471 GO:0003700|GO:0006355
Gso14g1735 282 PRINTS Ethylene responsive element binding protein signature 148 164 IPR001471 GO:0003700|GO:0006355
Gso14g1735 282 Pfam AP2 domain 125 174 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g1735 Gso-Chr14 49586738 49588711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g1735 28 222 AP2-EREBP Transcription Factor Family AT4G27950 43.216 4.22e-40 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso14g1735 AP2 1.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g1735 K13434 - gmx:100800489 510.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1735 14 49586738 49588711 Gso2g2014 2 44643117 44645078 GST
Gso18g0457 18 4502259 4503791 Gso14g1735 14 49586738 49588711 PCT
Gso14g1735 14 49586738 49588711 Gso18g0457 18 4502259 4503791 PCT