Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g1706 ATGGATAACCGAATTGTGATCTCGAATTGTGGAGCCATTAGCTTAATAGTCGATTTACTGCAATCAACGGATACTACAATCCAGGAACATTCTGTTACAACACTTCTTAACTTATCAATCAATGATAACAACAAAGCTGCTATTGCTAATGCTGGTGCAATTGAACCTTTGATTCACGTCCTTCAGATAGGGAGTCCAGAAGCCAAGGAGAATTCAGCTGCCACTCTTTTCAGCCTATCAGTTACTGAGGAAAACAAGATCAGGATAGGCAGGGCTGGGGCAATTAGACCACTGGTTGATTTATTAGGGAATGGGACCCCTAGAGGGAAGAAAGATGCTGCCACTGCTTTGTTTAATTTGTCATTATTTCATGAAAACAAGGATCGGATTGTGCAAGCTGGTGCTGTGAAAAACCTTGTAGATTTAATGGACCTGGCAGCCGGAATGGTTGATAAGGTAGTGGCTGTTTTAGCAAATCTTGCTACGATACCAGAAGGGAAAACAGCAATTGGTCAGCAAGGTGGCATTCCTGTTTTGGTTGAAGTTATCGAGTCGGGTTCTGCGAGAGGAAAAGAGAATGCAGCAGCAGCTCTTCTACATCTATGCTCAGACAATCATAGATACTTAACCATGGTGCTCCAAGAAGGAGCTGTGCCCCCTTTAGTAGCATTGTCACAATCAGGCACCCCAAGGGCCAAAGAAAAGGCCTTGGCTCTCCTTAATCAATTTAGAAGCCAAAGACATGGTAGTGCTGGAAGAGCTTGA 765 0.4366 MDNRIVISNCGAISLIVDLLQSTDTTIQEHSVTTLLNLSINDNNKAAIANAGAIEPLIHVLQIGSPEAKENSAATLFSLSVTEENKIRIGRAGAIRPLVDLLGNGTPRGKKDAATALFNLSLFHENKDRIVQAGAVKNLVDLMDLAAGMVDKVVAVLANLATIPEGKTAIGQQGGIPVLVEVIESGSARGKENAAAALLHLCSDNHRYLTMVLQEGAVPPLVALSQSGTPRAKEKALALLNQFRSQRHGSAGRA* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g1706 254 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 93 135 IPR000225 GO:0005515
Gso14g1706 254 PANTHER U BOX DOMAIN-CONTAINING 1 250 - -
Gso14g1706 254 Gene3D - 153 247 IPR011989 -
Gso14g1706 254 Gene3D - 66 152 IPR011989 -
Gso14g1706 254 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 52 94 IPR000225 GO:0005515
Gso14g1706 254 Gene3D - 1 65 IPR011989 -
Gso14g1706 254 SUPERFAMILY ARM repeat 2 243 IPR016024 -
Gso14g1706 254 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 11 53 IPR000225 GO:0005515
Gso14g1706 254 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 250 - -
Gso14g1706 254 Pfam Armadillo/beta-catenin-like repeat 2 39 IPR000225 GO:0005515
Gso14g1706 254 Pfam Armadillo/beta-catenin-like repeat 41 80 IPR000225 GO:0005515
Gso14g1706 254 Pfam Armadillo/beta-catenin-like repeat 164 203 IPR000225 GO:0005515
Gso14g1706 254 Pfam Armadillo/beta-catenin-like repeat 83 121 IPR000225 GO:0005515
Gso14g1706 254 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 134 175 IPR000225 GO:0005515
Gso14g1706 254 SMART arm_5 82 122 IPR000225 GO:0005515
Gso14g1706 254 SMART arm_5 1 40 IPR000225 GO:0005515
Gso14g1706 254 SMART arm_5 163 203 IPR000225 GO:0005515
Gso14g1706 254 SMART arm_5 41 81 IPR000225 GO:0005515
Gso14g1706 254 SMART arm_5 204 245 IPR000225 GO:0005515
Gso14g1706 254 SMART arm_5 123 162 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g1706 Gso-Chr14 49203007 49205999 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g1706 1 253 U-box Gene Family AT2G23140 78.656 5.60e-136 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g1706 - - gsj:114384996 474.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1706 14 49203007 49205999 Gso2g1991 2 44318952 44325630 GST
Gso18g0486 18 4880620 4888510 Gso14g1706 14 49203007 49205999 PCT
Gso14g1706 14 49203007 49205999 Gso18g0486 18 4880620 4888510 PCT