Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g1646 ATGGTTTCGTCAGTTTCGTGGGTGAGAGGCAAGTGCGTCGGTAAGGGCGCGTTTGGGGTTGTCAACGTGGCGGTTTCGAAAAGAGATAATCGCGTTTTCGCGGTGAAGTCCGTGGATTGCGGAAGGGGGCTTTCTGGTCAGGTGGAGGCGTTGGAGAACGAGATTGGGATTCTGAAACGAGTTACCTCGCCGCACGTGGTGGCTTATATCGGCGACGATGTCACGTGCGAGGGAACGGCGTCGTTCAGGAACCTTCATTTGGAGTACATGCCAGGTGGCACCGTCGCTGATTTGGACCGCGCTGACGTGGACGAGCGGTTAGTGAGGCGCTACGCGTGGTGCCTCGCAACCGCGCTGCGTGACGTCCACGCGCAAGGCTTCGTCCACTGCGACGTGAAAGGGAGGAACGTGCTTCTCTCCGGCGACGGCGAAATGGCGAAGCTCGCCGACTTCGGCGCGGCGGTGGAAATTGAATCCTCTCCGGCGATGTTGCTGTTGCCGCGGGGGAGTCCGATGTGGATGGCGCCCGAGGTGGTGCGCCGGGAGCGGCAGGGGCCGGAGTCCGACGTGTGGTCGCTCGGATGCACGGTGATCGAGATTGCCATCGGGAAACCGGCGTGGGAGGACCGCGGCGTCGACACGCTGAGTCGAATCGGTTACTCGGACGAGTTGCCGGAATTTCCAATCCAGTTGTCGGAGCTAGGGAAGGATTTTCTCGAGAAGTGTCTTAGAAGAGAACCGAGTGAACGGTGGAGTTGCGATCAGTTGCTTCAGCATCCATATTTGCTTCCCTACTACGCCCTTGTTGAATCGTCGCCTCGGTGCGTTCTCGACCGGGTTGACTCGGAGTTGAACTCCGAGTCAGATTATAACGACCGTGATCATCAAGAAGAGGTGTTTTCAATATTTACTAACATCGAAGAAAATTCAGTTATTAAAAATAGAATAAGTAAATTAGCGACAGAGTCGAGGGTAAATTGGGAAACACATGGTTGGGTAGTGGTGAGGGAAGTTGAGTCCAACGGAGAACCAACGACAACGGGAACAGAGGAAGAAGGAGCGTGTACGTGTGAGCGTGATGGTGTTGGTTCCAACAAAGAAGGGGTAAATTGGGAATTTCACAATGTGGCAGAGACTGGTATGGTATATTCGGATTCTGTAGGGGCAAATCGGGGAATAAGAAAGTTTGGTGGGAGTAACACCGCTGGAGGGGGTGTTGGTTGTTGCTGTCGGTATGGGTGTGGATGGGAAAAGTTGGGTAGGAATAGAGGAATAATCAGCATTTACAGCTTGTATTGTAAAAATTTCATGTCGTATAATTTAATATTCTTAATGTATATCAATATATTATGCTTTTCGATTATTTATGTTGTTTACCTTTTACTGCACGTGACTGAAAAGATTAGGGATGTGAAAAAATTAATTGGAAAGGAAAGGTGTTTGCAATTGAGAGCCAGAAGGTAG 1464 0.513 MVSSVSWVRGKCVGKGAFGVVNVAVSKRDNRVFAVKSVDCGRGLSGQVEALENEIGILKRVTSPHVVAYIGDDVTCEGTASFRNLHLEYMPGGTVADLDRADVDERLVRRYAWCLATALRDVHAQGFVHCDVKGRNVLLSGDGEMAKLADFGAAVEIESSPAMLLLPRGSPMWMAPEVVRRERQGPESDVWSLGCTVIEIAIGKPAWEDRGVDTLSRIGYSDELPEFPIQLSELGKDFLEKCLRREPSERWSCDQLLQHPYLLPYYALVESSPRCVLDRVDSELNSESDYNDRDHQEEVFSIFTNIEENSVIKNRISKLATESRVNWETHGWVVVREVESNGEPTTTGTEEEGACTCERDGVGSNKEGVNWEFHNVAETGMVYSDSVGANRGIRKFGGSNTAGGGVGCCCRYGCGWEKLGRNRGIISIYSLYCKNFMSYNLIFLMYINILCFSIIYVVYLLLHVTEKIRDVKKLIGKERCLQLRARR* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g1646 487 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672|GO:0006468
Gso14g1646 487 Gene3D Transferase(Phosphotransferase) domain 1 6 332 - -
Gso14g1646 487 ProSiteProfiles Protein kinase domain profile. 7 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso14g1646 487 SMART serkin_6 7 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso14g1646 487 CDD STKc_MAPKKK 6 262 - -
Gso14g1646 487 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 366 - -
Gso14g1646 487 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 14 3 366 - -
Gso14g1646 487 ProSitePatterns Protein kinases ATP-binding region signature. 13 36 IPR017441 GO:0005524
Gso14g1646 487 SUPERFAMILY Protein kinase-like (PK-like) 7 321 IPR011009 -
Gso14g1646 487 Pfam Protein kinase domain 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g1646 Gso-Chr14 48544200 48545849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g1646 7 343 MAP Kinase Kinase Kinase AT2G30040 56.305 3.05e-123 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gso14g1646 Pkinase 5.3e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g1646 - - gmx:100776227 977.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1646 14 48544200 48545849 Gso2g1941 2 43723190 43724687 GST
Gso18g0539 18 5571429 5573086 Gso14g1646 14 48544200 48545849 PCT
Gso14g1646 14 48544200 48545849 Gso18g0539 18 5571429 5573086 PCT