Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g1642 ATGTCTCTGAATCATTCTCCAATGGATGTTGATGGTGAGAATTCTCATGGGAGGAGTAAGCGTAGAAAAGGGTCGAGTAAAAGAAAGCTTCTTGTCAACCAGAGAGTTGAGTTGAAGAGTGTGGAAGAGGGTTTTCAGGGTTCATGGCACCCAGGGACAGTAGTCCGTTGTGAGAGGCAGAAGCGTCATGTCAAATATGACAACATTCTAGAAGATGATGGATCAAAGTATCTCGTGGATGTGGTGCGTGTTTCAGCTATTTTGGATGGTCTTGGTTCTTCTTCAGATTGTAGCAATGAATGTGGATTCATTAGACCACTGCCTCCTCCGCTTGCATTTGGGGAGAGGGACCTTCCATTTGGTCTCTGTGTTGATGTGAATTATGAAGAAGCCTGGTGGGAAGGAGTTATATTTGATCACTGCAATGGAACGAAGGAGAGGAGTGTGCTCTTCCCGGATTTGGGTGATGAAATGAAGGTAGGAATTCATCATATGCGGCTAACTCAGGATTGGGATGAAGTTACTGAGAATTGGGAGTCGCGAGGGAAGTGGGTGTTCCTCGAGATGGTTGAGGAATGCGAGAAGGAATCGGTTGTTGCAGTCTCATTCAAGCAGATATGGTATGATGTGAGGGCAACAAAGGAGTTTGATGACAATATAAAGCACTGGACTTGTAATGTGAAGGAATTGTGGAGAGACCTTGTAAAAGAGGTGATTGGTAACTACTATGTTCTCACACTAGAACAAGTTTTCCCAGCCTTAAACCTTCCAGAGGATTTCTTCAAAGAAACACCAGAGTCAGTTGAACCTACTGACAGCATTCCCCTTCAAGAGGAATATGATAAAGATCCTTTGGTGGATGGGGCATCCGAGAAGGAAATTATTTTGCAGCAAGAACCAGCATCTCCAGTTCAAGAGATCATGCCTGAGGCTGGTGAAGTAATGCCAGGTGCTAGCTGTTGTGGAAAGAAGAGAAAACGTGGACGCTCAGCATCCATATATTGGGAGCCGCTGGTACTGACCAATGTTGAATTCTGTCCTGATGTTATTAACGAATATATACATGGATGTGGGAGCAAGACTGTTAGGGAACTTTTGAAGACTAAAGTAAGGAAACATCTTGCATATCTTGGATGGAAAATTGAGTGGGCTGAAGATAAATATTTTCCTGGGCGAGGACGCTACAGGTACAAGTCACCTGATGATGCACAGGAGCAGAAGGTTTACACTTCAATTATTCAAGTTTTGACACACATGCAAATGGAGTCCAACATGAACACTGTGCAGCCCCAAATTGATCACAATAGGATGCATTCTACAAATGACACTAATCTTTCACATCTGCTTTCAGATTTACCCCCAAACGACCAGGATGTAGATGTTTGTCCTCCTCCAAAACGGAAACCTTCTAATGTCAAAGTTGTAGTTGAGCCGGAATTTTGTCCTCAAGCTGTTGTTAAATATTACTTGAATGCATCAAACAAACATTGGGTTGATAGAGGAAAATGGAGACTGAAAGCAAAGAAGCATTTGTTAGCAGAAGGATGGACCTTTGACTACCCAACCAAGAAGCGAAAGACAACTTTGTACATATCTCCAGGAAATAAGTGGTTGGGCTTACTTCGAGGTGCATGCAGAATACACATTAAAGAAAAGATTTCTGAATGGACTAATTCTGGTATGATACCTTTGAATGTCCCAGCCATAAATGAGTCAGGTGAAGGTCATATTGATAGTGAGAACCTATTAAAAATTTTGTCCCAAACGCTTGAAAAAGAGTCTGAATTGCTAACTGCTTCACCAGCAAGTAGATCAACTGAGAATAGAAACCATAGATGCACCAGGAATTCAAAAGCTTCCATGCCAAAGAGCCACAGGAAAGGATTATCAACACGTGTGCTATGGTCACGCAAAAGGGTGCAGAAGGTGTCTGCCCCTAGTCCGTCACACCAAAGACCTCGAAATGTCTCATCTTGGTTGATTGACAACAGTGTGGTGATGTCAAGATGTAAGGTCTATTGCTGGGCAGAAGGAGGCAGGAACTCTAATGTGGTTGAGGGGAGGATAACTTATGATGGAATCAAGTGTAGCTGTTGCTTGAAAATATATGGTCTTGGTGGCTTTGTTAATCATGCTGGTGGAAGTAGTGACTGCAGGCCTTCTGCTAGTATCTTTTTGAAGGATGGTAGGTCAATCTTAGATTGCATGATAAAAGCAATGCATGATCATAGAACAAGGGAAGATATGAACAGACCGTGCAGTGATCTGTGTGAAGGAGAAAATGACAACATTTGTTCTGTCTGTCAATATGGCGGTGAACTTGTTTTGTGTGACCGATGTCCATCAGCATTTCATAGTGCGTGTCTTGGTTTGGAGGATATCCCTGATGGTGACTGGTTTTGTCCATCTTGTCGTTGCGGGATTTGCAGACAAACCAAAATAGAAGGGACTGAGGATGGTGATTTACTTGCTTGCATTCAATGTGAACATAAATATCATGTTGAATGCTTGAAAGATAGAGAAAAATCTGAGTCAAGAAGATATATGAAAAATTGGCTGTGTGGAAAAGAGTGTGAACAGATATATGAAGGACTCCAAAGTCTATTAGGAAAACCACTTATAGTGGGTGCGAACAATCTAACATGGACATTGGTGAAGTTTATCAACTCTGAGAGTTGTGATGTTGGTAGTACTAAGAATGACTTATTGGCAGAGAAATACAGCAAACTCAGTGTTGCCCTTTCGGTGATGCACGAGTGTTTTGAGCCATTAAAGAACCCTTTTACTAGTAAAGATATTATTGATGATGTTATATTCAACACTAGGTCAGACCTTAATAGATTGAATTTTGAGGGTTTCTACACTGTACTTCTGGAGCAAAATGAAGAATTGATAAGTGTAGCAACTATTAGGGTATTTGGACAGAAAGTAGCAGAGGTACCACTTGTAGGTACCAGAATACAATATCGTCGACTTGGAATGTGTCGAATTCTAATGGGTGAGCTTGAGAAGAGGCTCACACAACTTGGAGTGGAGAGGCTAGTCTTGCCTGCTGTTTCTGGAGTGCTAGAAACATGGACCAATTCTTTTGGTTTTGCAAAGATGACAAATTTTGAGAGGTCACAGTTCTTGGACTATGCTTTCCTAGATTTTCAGGAAACCATCATGTGCCAGAAGCTGTTAAAAAGGAGTTCATCCCCCGAATCGGTTTTAACAAGAGCAGAGATGCAACCAAAACCACATGATGTTTTCACTGTCAAATGTAAAATTAAGTTTGAAAAGTCCAGTTCAGCACTTGAAGTGGACCAAGCTGAAGAGGCTCACAAAAGTAGGAAGGATCTACAAGTGGTGGAGTGTGTTCCAACTTTGCCTACTTCTTCCTAA 3384 0.4181 MSLNHSPMDVDGENSHGRSKRRKGSSKRKLLVNQRVELKSVEEGFQGSWHPGTVVRCERQKRHVKYDNILEDDGSKYLVDVVRVSAILDGLGSSSDCSNECGFIRPLPPPLAFGERDLPFGLCVDVNYEEAWWEGVIFDHCNGTKERSVLFPDLGDEMKVGIHHMRLTQDWDEVTENWESRGKWVFLEMVEECEKESVVAVSFKQIWYDVRATKEFDDNIKHWTCNVKELWRDLVKEVIGNYYVLTLEQVFPALNLPEDFFKETPESVEPTDSIPLQEEYDKDPLVDGASEKEIILQQEPASPVQEIMPEAGEVMPGASCCGKKRKRGRSASIYWEPLVLTNVEFCPDVINEYIHGCGSKTVRELLKTKVRKHLAYLGWKIEWAEDKYFPGRGRYRYKSPDDAQEQKVYTSIIQVLTHMQMESNMNTVQPQIDHNRMHSTNDTNLSHLLSDLPPNDQDVDVCPPPKRKPSNVKVVVEPEFCPQAVVKYYLNASNKHWVDRGKWRLKAKKHLLAEGWTFDYPTKKRKTTLYISPGNKWLGLLRGACRIHIKEKISEWTNSGMIPLNVPAINESGEGHIDSENLLKILSQTLEKESELLTASPASRSTENRNHRCTRNSKASMPKSHRKGLSTRVLWSRKRVQKVSAPSPSHQRPRNVSSWLIDNSVVMSRCKVYCWAEGGRNSNVVEGRITYDGIKCSCCLKIYGLGGFVNHAGGSSDCRPSASIFLKDGRSILDCMIKAMHDHRTREDMNRPCSDLCEGENDNICSVCQYGGELVLCDRCPSAFHSACLGLEDIPDGDWFCPSCRCGICRQTKIEGTEDGDLLACIQCEHKYHVECLKDREKSESRRYMKNWLCGKECEQIYEGLQSLLGKPLIVGANNLTWTLVKFINSESCDVGSTKNDLLAEKYSKLSVALSVMHECFEPLKNPFTSKDIIDDVIFNTRSDLNRLNFEGFYTVLLEQNEELISVATIRVFGQKVAEVPLVGTRIQYRRLGMCRILMGELEKRLTQLGVERLVLPAVSGVLETWTNSFGFAKMTNFERSQFLDYAFLDFQETIMCQKLLKRSSSPESVLTRAEMQPKPHDVFTVKCKIKFEKSSSALEVDQAEEAHKSRKDLQVVECVPTLPTSS* 1128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g1642 1127 MobiDBLite consensus disorder prediction 596 630 - -
Gso14g1642 1127 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 7 1118 - -
Gso14g1642 1127 Pfam Agenet domain 34 109 IPR008395 -
Gso14g1642 1127 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 756 806 IPR013083 -
Gso14g1642 1127 Pfam Tify domain binding domain 687 738 IPR032308 -
Gso14g1642 1127 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 900 1061 IPR000182 GO:0016407
Gso14g1642 1127 SMART agenet_At_2 28 96 IPR014002 -
Gso14g1642 1127 SMART agenet_At_2 116 173 IPR014002 -
Gso14g1642 1127 SUPERFAMILY FYVE/PHD zinc finger 760 810 IPR011011 -
Gso14g1642 1127 MobiDBLite consensus disorder prediction 1 28 - -
Gso14g1642 1127 Gene3D - 918 1061 - -
Gso14g1642 1127 SMART PHD_3 764 805 IPR001965 -
Gso14g1642 1127 SMART PHD_3 806 858 IPR001965 -
Gso14g1642 1127 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 807 861 IPR013083 -
Gso14g1642 1127 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 949 1042 IPR016181 -
Gso14g1642 1127 Pfam PHD-finger 764 806 IPR019787 -
Gso14g1642 1127 SMART ring_2 765 804 IPR001841 -
Gso14g1642 1127 SMART ring_2 806 861 IPR001841 -
Gso14g1642 1127 PANTHER PHD ZINC FINGER PROTEIN 7 1118 - -
Gso14g1642 1127 ProSiteProfiles Zinc finger PHD-type profile. 762 807 IPR019787 -
Gso14g1642 1127 CDD NAT_SF 956 1016 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g1642 Gso-Chr14 48464838 48471960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g1642 30 1009 PHD Transcription Factor Family AT5G58610 35.897 0.0 572
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gso14g1642 Agenet 8.5e-16 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g1642 - - gmx:102661511 2321.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1642 14 48464838 48471960 Gso2g1937 2 43644149 43650797 GST