Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g1635 ATGTGCGGTGTTTCCAAGGGGAAACCTTCTCAATTTGGTTTGGTCATGGAGGAGTATGCAAAAGAAGGGATGCATCATATAATTTCAGCTTTGCTTGAGTTTTCTGCAGCAGATGATCTGGTTAGTTTCAAAGATGCGGTTGAAAAGGAGGGTCATGATATTGATGGGGTAGGGTTTTGGTATGGAAGGTGTGTTGCCTCGAAGAAAATAGGTTATGAAGAGAGGACACCTCTCATGGTTGCTTCCATGTTTGGAAGCCTTGGTGTATCAACCTATATCCTTTCAACGGGTAGTGTCGATGTTAATTGGGCTAGTAGGTCAGATGGGGCTACTGCTCTTCATTGTGCTGTTGCTGGGGGTTCTGCCGCTTCCATTGAGGTTGTCAAGCTTTTGCTTGATGCATCTGCTGATGTTAATGCTATTGATGCCAACGGTAACCGGCCAATTGACTTGATTGGCTCGGTGACCAATTCTATCTTCAGTCAAAGGTCAAGGGTGCTACAGGCCCTCCTGGAGGGTACAAGTGATGCTGATCAGGCATGTCTTGCACTTCCAGAAGTGATTGACCAAATTGAGGAACAAAGGCAAGATATGACTACGCCCCGTGTTTCGAAAGATTATCCCATTGATCTCTCCCTTCCAGACATAAAGAATGGGATATATGGTACTGATGAGTTTAGGATGTATACATTCAAAGTGAAGCCTTGTTCGAGGGCGTATTCTCATGATTGGACTGAGTGCCCCTTTGTTCATCCAGGGGAAAATGCAAGGCGGCGTGATCCAAGGAAATATCATTACAGCTGTGTCCCTTGTCCCGAGTTCAGGAAGGGGTCTTGCAGCAAGGGCGATGCCTGTGAGTATGCACATGGTATTTTTGAGTGCTGGCTTCACCCTGCCCAGTACCGGACGCGGCTTTGCAAGGATGAGAGTGGATGCACAAGAAGGGTTTGCTTCTTTGCTCACAAGCCTGAGGAGCTTCGCCCCTTGTATGCTTCTACTGGTTCCGCTATTCCTTCTCCAAGGTCCTATTCTGCTAGTGCTTCTGCATTGGAGATGGGTTCAGTTAGTCCAATTGCACTTGGTTCTCCATCTGTCTTGATGCCACCTACCTCAACACCACCTTTGACTCCATCTGGAGCATCTTCTCCCATTGCTGGATCCATGTGGTCTCAATCTAATGTTTCTGTCCCTACCCTGCAGCTGCCCAAAAGCAGATTGAAGACCGCATCAACTGCAAGAGACATTGATTTAGATATTGAACTGCTTGGACTTGAAACACATCGGCGTAGACAGCAGCTAATGATGGATGAGATATCTGCTCTTTCCTCTCCCAACTGGAAAAATTCCATGCCTAATAGTCCATCTTTCCATGTTCCTTTGAGTGATCACACTGAGTTAAATAGGCTTTCAGGGGTGAAGCCTGCTAACCTTGAAGATATGTTTGGATCACTCGATCCATCAATTTTGTCTAAATACCATGGAATCTCACTTGATGTTGCAGGAACTCAGTTGCAATCTCCAACCGGAATCCAGATGCGCCAGAATGTGAACCAGCAGCTAGGAGGCTATTCATCCAGCCTTTCTACTTCGAATGTGATTGGGTCACGCTCCTTCAGGCTTGATCAGTCTGGCGAAGCAGCCACGGTTGCCTTGAATCCAAGAGCTGCTGCCTTTGCAAAGCGGAGCCAGAGCTTCATTGAGCGTAGCGTGGTGAACCATCATTCTGAGATTCCTTCTCCAAATCCCTCTACCTTCTCTAACTGGGGCTCACCTGGTGGAAAATTAGATTGGGCCATAAATGGAGAAGAGCTGAATAAGCTGAGGAAATCTGCTTCCTTTGGATTTCGAAGCAGCAGTAGTCCTCTAACAAAGGCTTCAAACAAAATTTCAGCAAATGTTGATGATGAGCCAGATGTGTCTTGGGTTAACTCACTTGTGAAGGATGCTCCACCAGAATCCGGTGAATATAGTGTGGAAGATCATCGAAAGCTACTGCAATGCCACAACGGAACAGATGCGATTCCAGCATGGCTGGAGCAATTGTACTTGGACCAGGAGCAAATGGTGGCGTGA 2073 0.4679 MCGVSKGKPSQFGLVMEEYAKEGMHHIISALLEFSAADDLVSFKDAVEKEGHDIDGVGFWYGRCVASKKIGYEERTPLMVASMFGSLGVSTYILSTGSVDVNWASRSDGATALHCAVAGGSAASIEVVKLLLDASADVNAIDANGNRPIDLIGSVTNSIFSQRSRVLQALLEGTSDADQACLALPEVIDQIEEQRQDMTTPRVSKDYPIDLSLPDIKNGIYGTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSKGDACEYAHGIFECWLHPAQYRTRLCKDESGCTRRVCFFAHKPEELRPLYASTGSAIPSPRSYSASASALEMGSVSPIALGSPSVLMPPTSTPPLTPSGASSPIAGSMWSQSNVSVPTLQLPKSRLKTASTARDIDLDIELLGLETHRRRQQLMMDEISALSSPNWKNSMPNSPSFHVPLSDHTELNRLSGVKPANLEDMFGSLDPSILSKYHGISLDVAGTQLQSPTGIQMRQNVNQQLGGYSSSLSTSNVIGSRSFRLDQSGEAATVALNPRAAAFAKRSQSFIERSVVNHHSEIPSPNPSTFSNWGSPGGKLDWAINGEELNKLRKSASFGFRSSSSPLTKASNKISANVDDEPDVSWVNSLVKDAPPESGEYSVEDHRKLLQCHNGTDAIPAWLEQLYLDQEQMVA* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g1635 690 PANTHER UNKEMPT FAMILY MEMBER 18 689 IPR045234 -
Gso14g1635 690 SMART ANK_2a 73 103 IPR002110 GO:0005515
Gso14g1635 690 SMART ANK_2a 108 140 IPR002110 GO:0005515
Gso14g1635 690 SMART c3hfinal6 265 291 IPR000571 GO:0046872
Gso14g1635 690 SMART c3hfinal6 300 323 IPR000571 GO:0046872
Gso14g1635 690 ProSiteProfiles Zinc finger C3H1-type profile. 270 292 IPR000571 GO:0046872
Gso14g1635 690 Gene3D - 15 179 IPR036770 -
Gso14g1635 690 ProSiteProfiles Ankyrin repeat region circular profile. 108 142 - -
Gso14g1635 690 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 18 689 - -
Gso14g1635 690 SUPERFAMILY Ankyrin repeat 70 150 IPR036770 -
Gso14g1635 690 Pfam Ankyrin repeats (3 copies) 67 142 IPR002110 GO:0005515
Gso14g1635 690 Gene3D - 266 328 - -
Gso14g1635 690 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 270 290 IPR000571 GO:0046872
Gso14g1635 690 ProSiteProfiles Ankyrin repeat profile. 108 143 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g1635 Gso-Chr14 48388315 48391525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g1635 26 685 C2H2 Transcription Factor Family AT5G12850 39.232 3.75e-144 435
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso14g1635 Ank_2 1.6e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g1635 - - gmx:100819521 1348.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1635 14 48388315 48391525 Gso2g1929 2 43564144 43567321 GST