Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g1580 ATGAAGTTCCAATTCCATGCAGTTCCATTTGTTCTACTAAGCTTCACAGTGTCTCTATTTGGTCTGATTGAAGCTGACTTGAACTCTGACAGACAAGCTCTCCTTGAGTTCTTTTCCAATGTTCCACATGCCCCAAGGCTAAACTGGAGTGATTCTACTCCAATTTGCACTTCTTGGGCTGGTGTCACTTGCAACCAAAATGGAACTAGTGTCATTGAAATCCATCTTCCAGGAGCTGGATTCAAGGGCTCCATTCCAAAGAACAGCCTAGGAAAACTAGATTCTCTTAAAATTCTTAGCCTTCACTCCAATGGCCTTAGAGGAAACCTTCCTTCTGACATTCTCTCCATTCCTTCACTCCAATATGTAAACCTGCAGCAGAATAACTTCTCAGGCCTAATCCCTTCCACTATCTCACCTAAACTCATAGCATTGGATATTTCTTCTAACAACTTTTCTGGAAGTATTCCAACTACCTTTCAGAATCTTAGTAGACTCACCTGGTTGTATCTCCAAAACAATTCCATCTCTGGAGCTATCCCTGACTTAAAAAACCTTACAAGTCTTAAGTATTTGAATTTGAGCTATAACAACTTGAATGGCTCAATTCCAAATTCCATCATCAATTATCCATACACTTCTTTTGTTGGAAACTCTCACTTGTGCGGACCACCTCTCAATAATTGTTCTGCAGCCTCTCCTCCATCTTCTTCTACTTCCTCTCTTTCTCCTTCTCCTTCTCCTTCTCCTGTTTATCAACCACTCTCTCCAGCAGCAACTCCCCAAAATAGAAGTGCTACCACTTCAAAGAGCTACTTTGGCCTAGCTACTATACTTGCTCTAGCAATTGGAGGATGTGCCTTCATCTCCCTCCTACTTTTGATTATCTTTGTATGTTGTTTGAAGAGGAACAAGAGTCAAAGCAGTGGCATTCTGACAAGAAAGGCACCTTGTGCTGGAAAGGCTGAGATTTCAAAGAGTTTTGGGAGTGGAGTGCAAGAGGCTGAAAAGAACAAGTTGTTTTTCTTTGAAGGTTGCTCTTACAGCTTTGACCTTGAAGACTTGTTAAAGGCTTCAGCTGAAGTTCTGGGAAAGGGGAGCTATGGAACAACATATAGGGCTGCTTTGGAGGATGGAACAACAGTGGTGGTTAAAAGGTTGAGGGAAGTTCTAGTTGGAAAGAAGGAGTTTGAGCAGCAGATGGAGGTTGTAGGAAGAATTGGAAGGCACCCCAATGTCATGCCCCTTAGAGCTTATTACTATTCCAAAGATGAGAAACTTCTAGTCTATGACTACATTTCAGGAGGCAGCTTGTTTTCCTTGTTGCACGGAAACAGAGGCATGGGAAGAGCTCCATTAGACTGGGATTCAAGAATGAAGATTGCACTAGGAGCTGCAAAGGGAATTGCTTCCATTCACACTGATCACATGGACTCAAAACTCACTCATGGCAACATCAAGTCCTCCAATGTGCTCATAACCCAACAACATGATGGCTGCATCACTGATGTAGGACTCACTCCTATGATGAGCACTCAATCAACCATGTCAAGAGCCAATGGCTACCGTGCTCCTGAAGTAACCGAGTATCGGAGGATCACTCAGAAGTCTGATGTTTACAGCTTTGGGGTGCTCCTTCTAGAACTGCTCACTGGCAAGGCCCCACTGGGATATCCTGGCTATGAGGACATGGTTGATCTTCCAAGGTGGGTGAGGTCTGTGGTTCGCGAGGAATGGACGGCTGAAGTTTTCGACGAGGAACTTCTTAGAGGGCAATATTTTGAAGAGGAGATGGTGCAGATGCTTCAGATTGCACTGGCCTGTGTGGCAAAGCTGGCAGATAATAGGCCAACAATGGATGAAACTGTTAGGAACATAGAGGAAATTAGGCTTCCAGAGTTGAAGAACCCTAACACATCATCCGAGTCTGATTCTAATCTACAAACTCCATGA 1953 0.4373 MKFQFHAVPFVLLSFTVSLFGLIEADLNSDRQALLEFFSNVPHAPRLNWSDSTPICTSWAGVTCNQNGTSVIEIHLPGAGFKGSIPKNSLGKLDSLKILSLHSNGLRGNLPSDILSIPSLQYVNLQQNNFSGLIPSTISPKLIALDISSNNFSGSIPTTFQNLSRLTWLYLQNNSISGAIPDLKNLTSLKYLNLSYNNLNGSIPNSIINYPYTSFVGNSHLCGPPLNNCSAASPPSSSTSSLSPSPSPSPVYQPLSPAATPQNRSATTSKSYFGLATILALAIGGCAFISLLLLIIFVCCLKRNKSQSSGILTRKAPCAGKAEISKSFGSGVQEAEKNKLFFFEGCSYSFDLEDLLKASAEVLGKGSYGTTYRAALEDGTTVVVKRLREVLVGKKEFEQQMEVVGRIGRHPNVMPLRAYYYSKDEKLLVYDYISGGSLFSLLHGNRGMGRAPLDWDSRMKIALGAAKGIASIHTDHMDSKLTHGNIKSSNVLITQQHDGCITDVGLTPMMSTQSTMSRANGYRAPEVTEYRRITQKSDVYSFGVLLLELLTGKAPLGYPGYEDMVDLPRWVRSVVREEWTAEVFDEELLRGQYFEEEMVQMLQIALACVAKLADNRPTMDETVRNIEEIRLPELKNPNTSSESDSNLQTP* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g1580 650 ProSiteProfiles Protein kinase domain profile. 357 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso14g1580 650 Pfam Protein kinase domain 361 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso14g1580 650 ProSitePatterns Protein kinases ATP-binding region signature. 363 394 IPR017441 GO:0005524
Gso14g1580 650 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
Gso14g1580 650 MobiDBLite consensus disorder prediction 233 263 - -
Gso14g1580 650 MobiDBLite consensus disorder prediction 629 650 - -
Gso14g1580 650 Gene3D Transferase(Phosphotransferase) domain 1 433 647 - -
Gso14g1580 650 Gene3D Ribonuclease Inhibitor 28 141 IPR032675 -
Gso14g1580 650 SUPERFAMILY L domain-like 39 225 - -
Gso14g1580 650 MobiDBLite consensus disorder prediction 634 650 - -
Gso14g1580 650 PANTHER LRR RECEPTOR-LIKE KINASE 5 650 - -
Gso14g1580 650 Gene3D Phosphorylase Kinase; domain 1 323 432 - -
Gso14g1580 650 ProSiteProfiles Leucine-rich repeat profile. 165 187 IPR001611 GO:0005515
Gso14g1580 650 SUPERFAMILY Protein kinase-like (PK-like) 361 625 IPR011009 -
Gso14g1580 650 Gene3D Ribonuclease Inhibitor 142 231 IPR032675 -
Gso14g1580 650 PANTHER OS05G0588300 PROTEIN 5 650 - -
Gso14g1580 650 Pfam Leucine Rich Repeat 188 207 IPR001611 GO:0005515
Gso14g1580 650 Pfam Leucine rich repeat 118 176 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g1580 Gso-Chr14 47758783 47763432 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g1580 8 649 Receptor kinase-like Gene Family AT5G58300 56.723 0.0 696
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gso14g1580 Pkinase 2.6e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g1580 - - gmx:100775340 1219.91