Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g1579 ATGGGGCGGAGACCTGCGAGGTGTTATAGGCAAATTAAGAACAAGCCATACCCCAAGTCACGTTTCTGCCGTGGTGTTCCTGATCCCAAGATCAGGATTTATGATGTTGGTATGAAGAAGAAGGGTGTTGATGAGTTTCCTTTCTGTGTCCATCTGGTTAGTTGGGAGAAGGAAAATGTTTCAAGTGAGGCCCTGGAAGCTGCTCGCATTGCTTGCAACAAGTACATGGCCAAATTTGCTGGAAAGGATGCTTTCCACTTGAGAGTCAGGGTGCACCCATTCCATGTTCTTAGGATCAACAAGATGCTTTCGTGTGCTGGTGCTGATAGGCTCCAAACTGGAATGAGAGGTGCTTTTGGAAAGCCACAGGGTACTTGTGCTAGAGTGGCTATTGGACAGGTCCTTCTTTCTGTCCGCTGCAAGGACAGCAACAGCCATCATGCTCAGGAGGCTCTTCGCCGTGCCAAGTTCAAGTTCCCTGGTCGTCAAAAGATTATTGTTAGCAGGAAATGGGGCTTCACCAAGTTTAGCCGTTCTGATTATCTCAAGTTCAAGTCAGAGAACAGAATTGTGCCCGATGGTGTGAATGCAAAGCTTCTTGGGTGCCATGGACCATTGGCCAATCGTGAACCTGGAAGAGCCTTTTTGGATACTGCTACTAGTTCTTAG 669 0.4783 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLKFKSENRIVPDGVNAKLLGCHGPLANREPGRAFLDTATSS* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g1579 222 CDD Ribosomal_L16_L10e 41 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Gso14g1579 222 Gene3D Ribosomal protein L10e/L16 1 216 IPR036920 GO:0003735|GO:0005840|GO:0006412
Gso14g1579 222 PANTHER 60S RIBOSOMAL PROTEIN L10 1 218 IPR001197 GO:0003735|GO:0005840|GO:0006412
Gso14g1579 222 PIRSF RPL10a_RPL10e 1 182 IPR001197 GO:0003735|GO:0005840|GO:0006412
Gso14g1579 222 TIGRFAM uL16_euk_arch: ribosomal protein uL16 1 174 IPR001197 GO:0003735|GO:0005840|GO:0006412
Gso14g1579 222 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 1 218 - -
Gso14g1579 222 Pfam Ribosomal protein L16p/L10e 12 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Gso14g1579 222 ProSitePatterns Ribosomal protein L10e signature. 108 129 IPR018255 GO:0003735|GO:0005840|GO:0006412
Gso14g1579 222 SUPERFAMILY Ribosomal protein L16p/L10e 4 173 IPR036920 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g1579 Gso-Chr14 47753705 47755476 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g1579 1 222 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 86.486 5.16e-144 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g1579 K02866 - gmx:100305619 460.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1579 14 47753705 47755476 Gso2g1876 2 42966678 42968476 GST
Gso14g1579 14 47753705 47755476 Gso4g1877 4 49032914 49035426 PCT
Gso4g1877 4 49032914 49035426 Gso14g1579 14 47753705 47755476 PCT