Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g1556 ATGGAGCTTCATGACCATGATTTCTTGGAGGAATTAATGTCTCTAAGAAGAGAAACATGGGATACAAATCCATGTTCACAAGAAAACCAGCTTTTCTCTAATGGCTGGAGTTTTGATTGTTTTGATCAAAACTATCATCAAGCTTTTCCTCCAAACTCTTTCTCTTGCCAACAAGTTCCTCAAAGTTACAACCACGACTACACCTACAATGAAATCTATAGTTCCTTACTTCACGAATTCTCTGCACCACAAGTTATAGATTCATCATCCTATAACACCCTTGATAGTACTCCACATAATACCCCTCCTTTTCTTGCTCAAGAAGATTATCCATTGTCCATGATGGAAGAAGAAGATCCGGGTTTTCTCGGGGAAGAGCTTCAATGCTTGGACCTTCAAACCACATGCAAAATGGAGTCAAGCCATTCCCCTGAAATGCCTATTTTCAACACAACTTCATCATGTGTGGAGAGAAAGAATAGAGCAAAGAAGCTTCAGGGGCAGCCTTCAAAGAACCTAATGGCAGAGAGGAGAAGAAGAAAGAGATTAAATGACAGGCTCTCCATGCTAAGATCAATTGTGCCTAAGATAAGTAAGATGGACAGAACAGCTATACTTGGAGACACTATCGATTATATGAAGGAGCTCTTGGAAAAGATTAATAATTTGAAGCAAGAAATAGAAGTTGATTCCAACATGGCTAGCATTTTCAAGGATGTAAAGCCAAATGAAATCATAGTGAGGAATTCTCCAAAGTTTGATGTGGAGAGGAGAAATGTCACTACAAGGGTGGAGATCTGCTGTGCAGGGAAGCCAGGCTTGTTGCTGTCTACAGTAAACACCTTGGAAACGTTAGGCCTCGAGATCCAACAATGTGTTATTAGCTGTTTCAATGATTTCACAGTGCAAGCTTCTTGTTCAGAGGAATTGCAGCAGAAGACAATTCTGAGTTCCGAAGATATAAAACAAGCACTATTTAGAAGCGCAGGATATGGTGGACGATGTTTGTGA 1011 0.4016 MELHDHDFLEELMSLRRETWDTNPCSQENQLFSNGWSFDCFDQNYHQAFPPNSFSCQQVPQSYNHDYTYNEIYSSLLHEFSAPQVIDSSSYNTLDSTPHNTPPFLAQEDYPLSMMEEEDPGFLGEELQCLDLQTTCKMESSHSPEMPIFNTTSSCVERKNRAKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILGDTIDYMKELLEKINNLKQEIEVDSNMASIFKDVKPNEIIVRNSPKFDVERRNVTTRVEICCAGKPGLLLSTVNTLETLGLEIQQCVISCFNDFTVQASCSEELQQKTILSSEDIKQALFRSAGYGGRCL* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g1556 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 167 216 IPR011598 GO:0046983
Gso14g1556 336 Pfam Helix-loop-helix DNA-binding domain 173 216 IPR011598 GO:0046983
Gso14g1556 336 PANTHER DNA BINDING PROTEIN 3 336 - -
Gso14g1556 336 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 3 336 - -
Gso14g1556 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 171 229 IPR036638 GO:0046983
Gso14g1556 336 SMART finulus 173 222 IPR011598 GO:0046983
Gso14g1556 336 Gene3D - 175 249 IPR036638 GO:0046983
Gso14g1556 336 Coils Coil 206 233 - -
Gso14g1556 336 CDD ACT_UUR-ACR-like 262 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g1556 Gso-Chr14 47301835 47304021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g1556 57 336 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 49.498 9.71e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso14g1556 HLH 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g1556 - - gmx:100814388 682.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1556 14 47301835 47304021 Gso2g1854 2 42654061 42656314 GST