Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g1549 ATGGCCTCGCAAGCAGTGCAGTTGCGTATCGAAGACAATCTAGTGATTATGGACAATGGCATCCTGCAAGTGTATTTATCCAATCCAGGTGGATTAGTCACTAGAATACAATACAATGGAATTGATAATCTGCTTGAAGTTCTTAGTGGAAGTGAGCATAGAGGGTATTGGGACGTTGTTTGGAGTGAAGCCGGAAGTACAGGAACAGCTGGGACATTTGAACGGTATGTGATGCTTCGTAATTCCTCAGGATTCTACTCCTACGCCATCTTTGAACACCTAGCAGAGTGGCCTGCTTTCAACATACCTCAAATAAGGATTGTTTATAAGCTTCGAAAAGACAATTTTCATTACATGGCCCTGTCGGATGATAGACAAAGATTTATGCCTCTCCCAGACGACAGATTACCCGGAAGAGGAAAAGAACTAGTTCCGCCGGAGGCAGTTTTGCTCGTTAATAAAGTGGAACCAGAGTTCAAGGGAGAGGGATACCAATTTTGGACTAGAGCTAACGAGAAAGGCTACTTCTCAATCAATAATATATGCGGTGGGGATTACAATCTCTATGCATGGGTTCCAGGTTTCATTGGAGAATATTGGAACAATATTGTTCTCGCCATAACACCAGGTTCATTTAATTATATTTTACTAGAGAGAAGATATAACCCCTGA 672 0.4196 MASQAVQLRIEDNLVIMDNGILQVYLSNPGGLVTRIQYNGIDNLLEVLSGSEHRGYWDVVWSEAGSTGTAGTFERYVMLRNSSGFYSYAIFEHLAEWPAFNIPQIRIVYKLRKDNFHYMALSDDRQRFMPLPDDRLPGRGKELVPPEAVLLVNKVEPEFKGEGYQFWTRANEKGYFSINNICGGDYNLYAWVPGFIGEYWNNIVLAITPGSFNYILLERRYNP* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g1549 223 CDD RGL4_M 158 211 IPR029413 -
Gso14g1549 223 Pfam Rhamnogalacturonate lyase family 3 68 IPR010325 -
Gso14g1549 223 Pfam Rhamnogalacturonate lyase family 74 162 IPR010325 -
Gso14g1549 223 PANTHER RHAMNOGALACTURONATE LYASE B-RELATED 163 211 - -
Gso14g1549 223 PANTHER RHAMNOGALACTURONATE LYASE B-RELATED 75 162 - -
Gso14g1549 223 PANTHER RHAMNOGALACTURONATE LYASE B-RELATED 1 75 - -
Gso14g1549 223 Pfam Polysaccharide lyase family 4, domain II 148 209 IPR029413 -
Gso14g1549 223 SUPERFAMILY Starch-binding domain-like 157 202 IPR013784 GO:0030246
Gso14g1549 223 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 75 - -
Gso14g1549 223 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 75 162 - -
Gso14g1549 223 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 163 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g1549 Gso-Chr14 47100235 47111120 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g1549 164 215 Polysaccharide Lyase AT1G09890 55.769 1.61e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g1549 K18195 - gsj:114384154 467.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1549 14 47100235 47111120 Gso2g1843 2 42452675 42458704 GST