Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g1545 ATGGAGCCATCAGCAATGTACGGACACTCCCAGCCCCTGAGCATGCCCTCGCAGATCGGCGGCGGCGAAAGCGACGACGGCTCCGGAAACGAGCACGCCGTCGACGGCCACCACCACCACATTCAGTACGAAACGCACGCGCTCGAGGACGGTGCCGCCGTCGTCGTCGAGGATGTTACCTCGGATGCGGTCTATGTCTCCGGCGGTGGAGGCCCCGTAGAGTCCAGCCAGCTTACGCTGTCGTTTCGTGGCCAAGTGTACGTCTTCGATGCCGTTACGCCTGATAAGGTTCAAGCGGTGTTGTTACTGTTGGGTGGATGTGAACTATCTTCAGGTGGTTCGCCATGTGTGGATCCGGGGGCTCAACATAATCAAAGGGGTTCAATGGAATTTCCTAAATGTAGTCTACCACACCGAGCTGCCTCATTACATAGGTTCAGGCAGAAGAGGAAAGAGCGATGCTTTGACAAAAAAGTGAGATATAGCGTGCGGCAAGAAGTTGCGCTCAGGATGCACCGTAACAAGGGCCAGTTTACTTCATCTAAGAAACAAGATGGAGCTAATAGTTATGGTACTGACCAAGATTCAGGACAGGATGATAGTCAATCCGAAACCTCATGTACACATTGTGGCATTAGTTCAAAATCCACCCCAATGATGCGGCGAGGGCCATCTGGTCCAAGGTCACTTTGCAACGCTTGTGGGCTTTTTTGGGCAAATAGGGGTGCTTTGCGAGACCTTTCTAAGAGAAATCAGGAACACTCTCTTCCACCAGTTGAGCAGGTTGATGAAGGTAATGACTCGGACTGTCGGACTGCCACTGCCGACCCTGCACATAACAATCTTCCTGCTTTCTCAGAGCATGATAATCCAGCTTTGGTAGCTGATCATAAAGTTTTCCAGTCTCAGAAAATGTTGAAGTAG 924 0.5152 MEPSAMYGHSQPLSMPSQIGGGESDDGSGNEHAVDGHHHHIQYETHALEDGAAVVVEDVTSDAVYVSGGGGPVESSQLTLSFRGQVYVFDAVTPDKVQAVLLLLGGCELSSGGSPCVDPGAQHNQRGSMEFPKCSLPHRAASLHRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSSKKQDGANSYGTDQDSGQDDSQSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANRGALRDLSKRNQEHSLPPVEQVDEGNDSDCRTATADPAHNNLPAFSEHDNPALVADHKVFQSQKMLK* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g1545 307 MobiDBLite consensus disorder prediction 172 225 - -
Gso14g1545 307 Pfam CCT motif 139 181 IPR010402 GO:0005515
Gso14g1545 307 PANTHER GATA TRANSCRIPTION FACTOR 25 6 274 - -
Gso14g1545 307 MobiDBLite consensus disorder prediction 250 269 - -
Gso14g1545 307 PANTHER GATA TRANSCRIPTION FACTOR 28 6 274 IPR045280 GO:0006355
Gso14g1545 307 SMART GATA_3 201 254 IPR000679 GO:0006355|GO:0043565
Gso14g1545 307 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 203 253 - -
Gso14g1545 307 ProSiteProfiles CCT domain profile. 139 181 IPR010402 GO:0005515
Gso14g1545 307 SMART tify_2 71 106 IPR010399 -
Gso14g1545 307 CDD ZnF_GATA 206 252 IPR000679 GO:0006355|GO:0043565
Gso14g1545 307 Pfam GATA zinc finger 207 242 IPR000679 GO:0006355|GO:0043565
Gso14g1545 307 ProSitePatterns GATA-type zinc finger domain. 207 234 IPR000679 GO:0006355|GO:0043565
Gso14g1545 307 Pfam tify domain 74 105 IPR010399 -
Gso14g1545 307 Gene3D - 197 255 IPR013088 GO:0006355|GO:0008270
Gso14g1545 307 ProSiteProfiles GATA-type zinc finger domain profile. 201 252 IPR000679 GO:0006355|GO:0043565
Gso14g1545 307 MobiDBLite consensus disorder prediction 180 220 - -
Gso14g1545 307 MobiDBLite consensus disorder prediction 10 24 - -
Gso14g1545 307 ProSiteProfiles Tify domain profile. 71 106 IPR010399 -
Gso14g1545 307 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g1545 Gso-Chr14 47036105 47041048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g1545 72 297 Tify Gene Family AT4G24470 56.432 3.76e-87 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gso14g1545 CCT 4.2e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g1545 - - gmx:100810269 615.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1545 14 47036105 47041048 Gso2g1836 2 42341202 42345705 GST
Gso14g1545 14 47036105 47041048 Gso4g0818 4 8559739 8564680 PCT
Gso14g1545 14 47036105 47041048 Gso6g0824 6 7817483 7823310 PCT