Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g1501 ATGGGCATCCACACGGATTGCCCTGCACCAGCACCATTGTCGATGAATTTGGATCATGCTCGTGCTTGTGTTCTTCTTCTTATTTTTCTTATGCCGTCTGCTACGGCACAGTTACAAAACTCGCCGCCACCGCCACCGTTGGATCCTTTCACGAGGTTAAGGTTCGACAAGACCATGGCTGCGGTTTTGGTAATCCTCGTAGTGGTTTTCTTCGCGTTTGGGTTTGTTTCTATCTACACGCGCCAATGCGCGGAGAGGAGGATCAGAGGGAGGCTCGACCTGGCGGTGGCGATCGCCGGCGGGATGGAGCGCCGGCAGCACCGCGGCCTCGACGCGGCGGTGGTAGAGACGTTCCCGACCTTCGTGTACTTCGAGGTTAAGGCACTGAAGATCGGAAGGGCCACGCTGGAATGCGCCGTGTGCCTCAACGAGTTCCGCGACGACGAAACGCTGCGTTTGATCCCCAAGTGCTGCCACGTGTTCCACTCCGATTGCATCGACGCGTGGCTGGCGAATCACTCCACTTGTCCCGTTTGCCGCGCCAACCTCGCGCCCAAGCCCGAGGACGCGCCATCTTCCGTTGAGATTCAGCTTTCAGATCCGGCCCGGCCCATTGGGCCCAATGAGCCCGGTCATGATCCGAATTACATCAACCCGGTGGAGGAGCGCGAAGGTGAACAAAACAGAATCGTTACGGAGCCTCCACGTGTTTTAGATGATCCCAACCGGGCCCGTCCGGTTCGGTCTAAATCGACCGGGTTTGGCATTGCAAGGCTGTTTCCGCGATCTCACTCGACGGGTCACTCGTTGGTTCGACCGGGTGAGGATTGTGAGCGGTTCACGCTGCGGTTGCCGGAAGAGGTGCGGGACCGGCTCGTGCGATCCGCGACGCTGAACCGGACGAAGAGTTGCGGGATGACATGGCAGCTGGAGAGCAGCGAGAGAAGGGGTTACCGGACGGGGAGTGTGGGGAGGTACGAGCGGTTCGGTGGGGGAGGGCCGGTTGGACCGGTGGGGTTCATGTGGACCCCACCGTTTTGGGGTAGGACCGGTTCGGTGAAGTCACCTAAGGCAACAAGGGTGAAGGATGAAGTTGACGCGGGAGAACGTTCCTCTGATCGTTTGTTTTCCAAGGATTGA 1140 0.5895 MGIHTDCPAPAPLSMNLDHARACVLLLIFLMPSATAQLQNSPPPPPLDPFTRLRFDKTMAAVLVILVVVFFAFGFVSIYTRQCAERRIRGRLDLAVAIAGGMERRQHRGLDAAVVETFPTFVYFEVKALKIGRATLECAVCLNEFRDDETLRLIPKCCHVFHSDCIDAWLANHSTCPVCRANLAPKPEDAPSSVEIQLSDPARPIGPNEPGHDPNYINPVEEREGEQNRIVTEPPRVLDDPNRARPVRSKSTGFGIARLFPRSHSTGHSLVRPGEDCERFTLRLPEEVRDRLVRSATLNRTKSCGMTWQLESSERRGYRTGSVGRYERFGGGGPVGPVGFMWTPPFWGRTGSVKSPKATRVKDEVDAGERSSDRLFSKD* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g1501 379 PANTHER RING-H2 FINGER PROTEIN ATL11 25 312 - -
Gso14g1501 379 PANTHER RING FINGER DOMAIN-CONTAINING 25 312 - -
Gso14g1501 379 Pfam Ring finger domain 137 180 IPR001841 -
Gso14g1501 379 MobiDBLite consensus disorder prediction 356 379 - -
Gso14g1501 379 SMART ring_2 138 179 IPR001841 -
Gso14g1501 379 ProSiteProfiles Zinc finger RING-type profile. 138 180 IPR001841 -
Gso14g1501 379 CDD RING-H2_PA-TM-RING 137 180 - -
Gso14g1501 379 SUPERFAMILY RING/U-box 125 190 - -
Gso14g1501 379 MobiDBLite consensus disorder prediction 348 379 - -
Gso14g1501 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 186 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g1501 Gso-Chr14 46296833 46298570 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g1501 18 370 Rapid Response to Elicitors AT3G05200 41.600 1.04e-68 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g1501 K10664 - gmx:100815982 731.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1501 14 46296833 46298570 Gso2g1795 2 41717415 41719315 GST
Gso14g1501 14 46296833 46298570 Gso4g1907 4 49282378 49284858 PCT
Gso14g1501 14 46296833 46298570 Gso6g0837 6 7968626 7970400 PCT
Gso4g1907 4 49282378 49284858 Gso14g1501 14 46296833 46298570 PCT
Gso6g0837 6 7968626 7970400 Gso14g1501 14 46296833 46298570 PCT