Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g1497 ATGGCCCTAGAGGCCGTGGTTTTCCCACAAGATCCATTCACTTACGGTTGCAACAACAAAGACTTCTTGTACTCGTTAGTAGGAGGTGGTGGAGGAAGCCAAACCCATGTGGGAATCATCAACAACAACAACATAGACCACACCCTGCATGCAAATTGGGATTCATCTTCTCCTTCGGTGTTGCAAAATGTTAAAGACCAGTGGGATTCACACTCCTCCCCTGAAGCTTGCACTGTTGATCAATCCCTTCCTGCAGTCTTCCCTCCTCCTTCTTCCTCGGCCGAAGCCGCTGCCATGGGCCGCCGCAAACGACGTCGCACCAAGAGCGCCAAGAACAAGGAGGAGATCGAGAACCAGAGGATGACCCACATTGCAGTTGAGCGCAATAGAAGAAAACAGATGAACGAGTACCTCGCCGTGCTTAGATCCTTGATGCCTCCTTCTTATGTACAAAGGGGCGATCAAGCATCTATTATTGGGGGCGCCATTAACTTCGTGAAGGAGCTGGAGCAGCTTCTGCAGTGCATGAAGGGCCAGAAGAGAACAAAGGAGGGTGGCTTCTCTGACTCATCACCCTTTGCTGAGTTCTTCATGTTCCCCCAATACTCGACACGTGCGACACAGAGCAGCAGCAGCAGCAGCAGAGGCTACCCTGGCACGTGCGAGGCCAACAACAACATTGCACGGAACCATTCATGGGCCGTGGCAGACATAGAAGTGACCTTGGTAGATGGCCATGCCAACATGAAGATACTCTCAAAGAAACGACCAGGGTTGCTTCTGAAGATGGTTGTTGGTCTTCAAAGTCTTGGTCTCAGCATTCTTCACCTTAATGTTACCACTGTTGACGATATGGTCCTTACCTCAGTTAGTGTTAAGGTAGAGGAAGGGTGTCAGCTGAACACGGTGGATGAAATTGCAGCTGCTGTGCATCAATTATCACGCACAGTTCAGGAGGAAGCTGTTTTCAGCTGA 975 0.5036 MALEAVVFPQDPFTYGCNNKDFLYSLVGGGGGSQTHVGIINNNNIDHTLHANWDSSSPSVLQNVKDQWDSHSSPEACTVDQSLPAVFPPPSSSAEAAAMGRRKRRRTKSAKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPPSYVQRGDQASIIGGAINFVKELEQLLQCMKGQKRTKEGGFSDSSPFAEFFMFPQYSTRATQSSSSSSRGYPGTCEANNNIARNHSWAVADIEVTLVDGHANMKILSKKRPGLLLKMVVGLQSLGLSILHLNVTTVDDMVLTSVSVKVEEGCQLNTVDEIAAAVHQLSRTVQEEAVFS* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g1497 324 CDD ACT_UUR-ACR-like 249 313 - -
Gso14g1497 324 PANTHER MAX DIMERIZATION, MAD 1 323 - -
Gso14g1497 324 CDD bHLH_AtFAMA_like 121 184 - -
Gso14g1497 324 MobiDBLite consensus disorder prediction 88 115 - -
Gso14g1497 324 ProSiteProfiles ACT domain profile. 248 324 IPR002912 -
Gso14g1497 324 SMART finulus 124 175 IPR011598 GO:0046983
Gso14g1497 324 Pfam Helix-loop-helix DNA-binding domain 119 170 IPR011598 GO:0046983
Gso14g1497 324 Gene3D - 108 184 IPR036638 GO:0046983
Gso14g1497 324 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 118 183 IPR036638 GO:0046983
Gso14g1497 324 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 118 169 IPR011598 GO:0046983
Gso14g1497 324 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g1497 Gso-Chr14 46203850 46207543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g1497 1 294 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 49.541 2.27e-78 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso14g1497 HLH 6.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g1497 - - gmx:100797856 604.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1497 14 46203850 46207543 Gso2g1793 2 41678557 41682083 GST
Gso14g1497 14 46203850 46207543 Gso4g0837 4 8878624 8880597 PCT
Gso14g1497 14 46203850 46207543 Gso6g0838 6 7986526 7988498 PCT
Gso4g0837 4 8878624 8880597 Gso14g1497 14 46203850 46207543 PCT
Gso6g0838 6 7986526 7988498 Gso14g1497 14 46203850 46207543 PCT