Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g1471 ATGCAAATCATATCAAAATTTCATTCTTTTTGCCTTGACATGAATCAAAACCAGCTTCAGCCCCTTCCTCTCCTTAGTAGCTTCTTAGGTTCATCTCCTGAAGAATCTTTGCTACAAAACCAAAATGAAAATCCTAATGCATGCCATGCTCAAGTTGAGGATGTTACAGTGGCCTTACACATAGGCCTCCCTGACCATTCAAGTGGCTCCAATTCCACCAATAATCATGGATTTGTGAATGCCACAACTCAAGTTCCTAACAATTACTGGATACCAACTCAGGAGCAGATCCTCATTGGGTTTAGCCATTTCTCTTGTCCTGTGTGCCACAAAACCTTCAACCGCTACAACAACCTTCAGATGCATATGTGGGGACATGGGTCACAGTATCGCAGAGGCCCAGACTCACTGAAACGAACCCATCCACGGCCCTTGTTGGACCTTCCATGCTACTGTTGCGCAAGAGGGTGCAAGAACAACATCGAGCACGCACGTGCCAAGCCTCTGAAGGATTTTCGCACGCTTCAAACACACTACAAGAGGAAGCACGGTTCCAAGCCCTTCACGTGCCGCAAGTGTGGCAAGCCTCTGGCCGTGAAAGGTGACTGGCGAACCCACGAGAAAAACTGTGGCAAACGATGGCTTTGTATCTGTGGTTCTGATTTCAAGCATAAGAGGTCACTTAAAGACCACATAAAAGCCTTTGGATTTGGTCACACCCCTTTTTCTTCTTTTTCTGATGGTATGTAA 750 0.4613 MQIISKFHSFCLDMNQNQLQPLPLLSSFLGSSPEESLLQNQNENPNACHAQVEDVTVALHIGLPDHSSGSNSTNNHGFVNATTQVPNNYWIPTQEQILIGFSHFSCPVCHKTFNRYNNLQMHMWGHGSQYRRGPDSLKRTHPRPLLDLPCYCCARGCKNNIEHARAKPLKDFRTLQTHYKRKHGSKPFTCRKCGKPLAVKGDWRTHEKNCGKRWLCICGSDFKHKRSLKDHIKAFGFGHTPFSSFSDGM* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g1471 249 ProSitePatterns Zinc finger C2H2 type domain signature. 106 126 IPR013087 -
Gso14g1471 249 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 17 244 - -
Gso14g1471 249 Gene3D Classic Zinc Finger 184 240 - -
Gso14g1471 249 SMART c2h2final6 104 126 IPR013087 -
Gso14g1471 249 SMART c2h2final6 188 208 IPR013087 -
Gso14g1471 249 Gene3D Classic Zinc Finger 103 126 - -
Gso14g1471 249 PANTHER ZINC FINGER PROTEIN WIP2 17 244 IPR043584 GO:0003700|GO:0010468
Gso14g1471 249 SUPERFAMILY beta-beta-alpha zinc fingers 99 126 IPR036236 -
Gso14g1471 249 ProSiteProfiles Zinc finger C2H2 type domain profile. 104 131 IPR013087 -
Gso14g1471 249 SUPERFAMILY beta-beta-alpha zinc fingers 173 208 IPR036236 -
Gso14g1471 249 Pfam Zinc finger, C2H2 type 104 123 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g1471 Gso-Chr14 45627416 45629843 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g1471 14 244 C2H2 Transcription Factor Family AT1G34790 57.422 2.06e-99 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso14g1471 zf-C2H2 0.00059 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g1471 - - gmx:547675 511.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1471 14 45627416 45629843 Gso13g0636 13 20415637 20417775 GST