LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso14g1422	ATGCTTGCATATATACAACACACTTTACAGTTTATAGATAATAATAAATCATCGATCAAGAATATGGGTCGTGTTAAACTCGAGATAAAGAGAATAGAGAACCCCACAAATCGACAAGTTACATTCTCAAAACGTAGAAATGGCCTCATCAAGAAAGCATATGAGCTATCAATCCTATGTGACATTGATATTGCTGTTATAATGTTTTCTCCATCAGGACGTCTGAACCACTTTTCCGGTAGGAGGAGGATTGAGGATGTTTTCACTCGTTACATTAATCTTCCTGATCAAGAAAGAGATAACGCTGTAAGTTTTCCTGAGCTACCCTATCGCAGGAGTATTCAGAATAAGGAGTATCTACTTAGGACCCTTCAGCAACTGAGGAGTGAAAATGACATAGCTCTTCAATTGGCTAATCCGGGAGACATTAACTCTGAGATTGAGGAACTCCAACAAGAAGTTAATAGGTTACAACAGCAACTTCAAATGGCCGAGGAGCAAATAAGGTTATATGAACCCGACCCATTAAAGATGTCATCTATGGCGGATCTTGAAAACAGTGAAAAACACCTTGTAGATGTCTTGACACGTGTCATACAAAGAAAGGAATACTTGTTGAGCAACCATCTATCTTCGTATGATCCATCTGGTATTCAGGGGATACCGACCTCTTTCGAGAATGTAGGGTGGTTGCAGGATGGGAGTCAGAACCAAGCCCAGATTTTTGATGCATCTGCTCCTTTAGATCCTTTGAGGGACTTGTCTTCCACCATGTATGGTTCATTTTCCCAAGGGCGAAGTTCAAATGCTGATCCACGAGGCATGGGGGAGTGCCACGTGTCAAATCCAAGTGATGGGAACCTTCAAGCATGGCCTCAAGGGTACACATTGTATCCTCATCATATTCAGCATGACATGGTGGGACCCGACATGCCAGATATGATGCCACATGCGCAAGTGAACCTCCCAATCACTGCCTTGGAACCACCTAAGAATAATGAACCTGTAGAATATGACCAGTCCAAACAACCTCATCATCATTGA	1044	0.4215	MLAYIQHTLQFIDNNKSSIKNMGRVKLEIKRIENPTNRQVTFSKRRNGLIKKAYELSILCDIDIAVIMFSPSGRLNHFSGRRRIEDVFTRYINLPDQERDNAVSFPELPYRRSIQNKEYLLRTLQQLRSENDIALQLANPGDINSEIEELQQEVNRLQQQLQMAEEQIRLYEPDPLKMSSMADLENSEKHLVDVLTRVIQRKEYLLSNHLSSYDPSGIQGIPTSFENVGWLQDGSQNQAQIFDASAPLDPLRDLSSTMYGSFSQGRSSNADPRGMGECHVSNPSDGNLQAWPQGYTLYPHHIQHDMVGPDMPDMMPHAQVNLPITALEPPKNNEPVEYDQSKQPHHH*	348

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso14g1422	347	Coils	Coil	140	174	-	-
	Gso14g1422	347	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	31	78	IPR002100	GO:0003677\|GO:0046983
	Gso14g1422	347	PANTHER	AGAMOUS-LIKE MADS-BOX PROTEIN AGL104	22	296	-	-
	Gso14g1422	347	ProSiteProfiles	MADS-box domain profile.	22	82	IPR002100	GO:0003677\|GO:0046983
	Gso14g1422	347	MobiDBLite	consensus disorder prediction	326	347	-	-
	Gso14g1422	347	SUPERFAMILY	SRF-like	23	101	IPR036879	GO:0003677\|GO:0046983
	Gso14g1422	347	Gene3D	-	35	107	IPR036879	GO:0003677\|GO:0046983
	Gso14g1422	347	SMART	madsneu2	22	81	IPR002100	GO:0003677\|GO:0046983
	Gso14g1422	347	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	22	296	-	-
	Gso14g1422	347	ProSitePatterns	MADS-box domain signature.	24	78	IPR002100	GO:0003677\|GO:0046983
	Gso14g1422	347	PRINTS	MADS domain signature	24	44	IPR002100	GO:0003677\|GO:0046983
	Gso14g1422	347	PRINTS	MADS domain signature	44	59	IPR002100	GO:0003677\|GO:0046983
	Gso14g1422	347	PRINTS	MADS domain signature	59	80	IPR002100	GO:0003677\|GO:0046983
	Gso14g1422	347	MobiDBLite	consensus disorder prediction	260	279	-	-
	Gso14g1422	347	CDD	MADS_MEF2_like	23	96	IPR033896	GO:0000977\|GO:0045944

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso14g1422	Gso-Chr14	44118748	44123209	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso14g1422	22	339	Type I MADS-box Gene Family	AT1G22130	57.055	1.61e-121	352

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Gso14g1422		SRF-TF	5.2e-26	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso14g1422	-		-	gmx:100305913	685.256