Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g1403 ATGTCTCCGCCGCAGCCCCGCCGCGTCGACCCCAAAATCTGGCGGGCATGCGCCGGCGCCGCCGTGCAAATCCCCAAGCTCCATTCTAGGGTTTACTACTTCCCCCAGGGCCACCTGGAGCACGCCTCTCCCTCGCATTACCTCAACCCTCTCCTCCGCTCTCTTCCCTTCGTCCCCTGCCACGTGTCCTCCCTCGATTTCCTCGCCGATCCTTTCTCCGACGAGGTCTTCGCTAAGTTCCTCCTCACGCCCCTCTCGCAACAACCTTTCCCAAACGACACCACGGAGGCTCGAAACGAAGAAGAGAAGGACCGCGAGAACGGCGTCGTTTCGTTCTCGAAGATCCTGACTCCCTCCGACGCCAACAACGGCGGCGGCTTCTCCGTGCCGCGCTACTGTGCGGACTCGTGTTTTCCTCCGCTCGACTTCCGTGCCGATCCGCCCGTCCAGCTCCTCTCCGTCGCCGACGTCCACGGCGTCGAGTGGCGCTTCCGCCACATTTACCGCGGCACGCCGCGCCGCCACCTCTTCACCACCGGCTGGAGCAAGTTCGTCAACCACAAAAAGCTCGTCGCCGGCGACACCGTCGTCTTCGTCAAGGACTCCGACGGCAGGGTCTCCGTCGGAATCCGCCGCGCGGCTCGGTTTGCCGCCGCGATCGAGACTCCGCAGCCGCCACCTGCGGAACGGGAGGGGTTTTCGCGGTCCGCGACGGGGAGAGTGACCGCGGAGGCCGTGGCGGCCGCTGCGGAGTCCGCGGCGCGAAACGCTCCGTTCGAGGTGGTGTATTATCCGAGGACCGGTTTTGCGGATTTTGTGGTGAGTGCTGAGGTTGTGGAGGAATCGATGAAGTGCGCGTGGGTTGGTGGAATGAGAGTGAAGATTGCAATGGAGACTGAGGATTCTTCTAGAATGACGTGGTTTCAAGGGACGGTTTCTTCTGCATGTGCTTCTGAGAATGGACCTTGGCGCATGCTTCAGGTTAATTGGGATGAACCTGAAGTCTTGCAGAATGCAAAGCGAGTCAGTCCTTGGCAGGTTGAACTTGTTTCCCTTCCATTTGCACTTCATACAGTATACTCCCCTAACAAAAGGCTTAGATCTGACCAGGGTTCTGGGCTGTTAAGTAATAGGGAGGGAGACCCCTTCTTTCCTATGACAGGGTTCCCTAACTCGACAATGGAACACATGACAGGGTTCCCTAACTCGACAGTGGGACACATGGATAAATCATTGTTGAGTTATGATACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTATTTTCTCCATCAAGTTTTTCCAACTTTTTAAATGATAAGTCCTATCTGTATATGGGTAGTGGTTCATTTGGGAACAATCCAGTGCAAAGTTTGGGAACTGTGACAACAGAGCTAAACATGAGCAGTTCTCAATCGGATGACTTGTCACCACATAGCCAGAGTAGTTTTCATTCCTTTGCCAGAGAGTTTGCTGGGACCCGGAACTGTGACACCAAAGTTGCTTCTGGTTCAATTCTGCTATTTGGTAAGATCATACAGCCTGCTGAAAGTGATTTGCATGATGGTGATTGCATGGAACGTGATGGCAGCAGGGGCAGCAATAAACTTAAGACAGTTGAGGCATGCTATTTTTCAAAGTAG 1647 0.5513 MSPPQPRRVDPKIWRACAGAAVQIPKLHSRVYYFPQGHLEHASPSHYLNPLLRSLPFVPCHVSSLDFLADPFSDEVFAKFLLTPLSQQPFPNDTTEARNEEEKDRENGVVSFSKILTPSDANNGGGFSVPRYCADSCFPPLDFRADPPVQLLSVADVHGVEWRFRHIYRGTPRRHLFTTGWSKFVNHKKLVAGDTVVFVKDSDGRVSVGIRRAARFAAAIETPQPPPAEREGFSRSATGRVTAEAVAAAAESAARNAPFEVVYYPRTGFADFVVSAEVVEESMKCAWVGGMRVKIAMETEDSSRMTWFQGTVSSACASENGPWRMLQVNWDEPEVLQNAKRVSPWQVELVSLPFALHTVYSPNKRLRSDQGSGLLSNREGDPFFPMTGFPNSTMEHMTGFPNSTVGHMDKSLLSYDTFPAGMQGARHDLFSPSSFSNFLNDKSYLYMGSGSFGNNPVQSLGTVTTELNMSSSQSDDLSPHSQSSFHSFAREFAGTRNCDTKVASGSILLFGKIIQPAESDLHDGDCMERDGSRGSNKLKTVEACYFSK* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g1403 548 CDD B3_DNA 111 206 IPR003340 GO:0003677
Gso14g1403 548 SUPERFAMILY DNA-binding pseudobarrel domain 105 216 IPR015300 -
Gso14g1403 548 PANTHER AUXIN RESPONSE FACTOR 5 538 - -
Gso14g1403 548 SMART B3_2 112 214 IPR003340 GO:0003677
Gso14g1403 548 ProSiteProfiles B3 DNA-binding domain profile. 112 214 IPR003340 GO:0003677
Gso14g1403 548 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 5 538 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gso14g1403 548 Gene3D - 109 214 IPR015300 -
Gso14g1403 548 Pfam Auxin response factor 249 326 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gso14g1403 548 Gene3D - 288 353 - -
Gso14g1403 548 Pfam B3 DNA binding domain 112 213 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g1403 Gso-Chr14 43522421 43525190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g1403 1 540 B3 DNA Binding Superfamily AT1G77850 47.241 4.60e-164 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gso14g1403 B3 1.6e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g1403 - - gmx:100804933 1080.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1403 14 43522421 43525190 Gso13g0592 13 19525785 19530134 GST