Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g1349 ATGGAACCACAGAAAAGTCCATTAATGGATGAAAGCCTATGTGATGTTTCCCATGATACTGAGTTTGGGGACACACACTTTGGTGGAGGGGATCTTTTTTCCATTTTGGAGAGCCTAGAAGACTTGAAAGATTTTCCTTCCACCAACAATGAAGCTGCTGTTATTGGCCCAACTTTCAAAGAAAATGAGCAAAACTCAAAAAAGGTCTCAATATCTTCACGTGCCCCACAAGATTCTGAAACTGAGCCTGAAATCTCACCAAAAAGCAAGAGACAAAAGCTTAGTCCCACATTGGTTGAGGAACCACAGAAGGTGTCTCACATAACCGTGGAGCGCAACAGAAGAAAGGAAATGAATGAAAACTTATCGATCTTGAGGTCACTTATGCCTTTCTTTTATGTCAAGCGGGGAGACCAAGCATCAATAATTGGAGGTGTGATTGATTACATCAACGAGTTGCAGCAGCTTCTACAGTGCCTAGAGGCCAAGAAACAAAGAAAAGTTTACAATGAAGTCCTAAGCCCAAGGCTAGTTTCAAGCCTGAGGCCTTCATCACTAAGTCCTGGAAAACCACCCTTGAGCCCTAGAATAAACCTTCCCATTAGTCCAAGGAATCCACAACCAGGTAGCCCTTACAAGCTCAGATTGCAGCCAGGTTACCTTTCCCCCACCATAGCCAACTCTCCTACTTCTTCAGCTTCTTCTTCCATCAACGATAATATCAATGAGCTTTTTGCCAATTCAAAGTCCATTATAGCTGATGTTGAGGTCAAGTTTTCAAGTCCACATGTGCTTCTGAAGACTGTGTCACTACCGATTCCAGGCCAGGCCATGAGAATAATATCAGCTCTTGAAGACCTAGCACTTGAAATCCTCCATGTGAACATTAGCACTGCTGATGAAACCATGCTAAACTCAGTCACTATTAAGATTGGAATTGAATGCCAACTCAGTGCTGAAGAACTTGCTCAACAAATCCAGCAAACATTCTGCTAA 996 0.4277 MEPQKSPLMDESLCDVSHDTEFGDTHFGGGDLFSILESLEDLKDFPSTNNEAAVIGPTFKENEQNSKKVSISSRAPQDSETEPEISPKSKRQKLSPTLVEEPQKVSHITVERNRRKEMNENLSILRSLMPFFYVKRGDQASIIGGVIDYINELQQLLQCLEAKKQRKVYNEVLSPRLVSSLRPSSLSPGKPPLSPRINLPISPRNPQPGSPYKLRLQPGYLSPTIANSPTSSASSSINDNINELFANSKSIIADVEVKFSSPHVLLKTVSLPIPGQAMRIISALEDLALEILHVNISTADETMLNSVTIKIGIECQLSAEELAQQIQQTFC* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g1349 331 MobiDBLite consensus disorder prediction 180 208 - -
Gso14g1349 331 PANTHER TRANSCRIPTION FACTOR SPEECHLESS 9 331 - -
Gso14g1349 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 101 176 IPR036638 GO:0046983
Gso14g1349 331 Coils Coil 150 170 - -
Gso14g1349 331 Gene3D - 98 168 IPR036638 GO:0046983
Gso14g1349 331 SMART finulus 108 159 IPR011598 GO:0046983
Gso14g1349 331 MobiDBLite consensus disorder prediction 53 80 - -
Gso14g1349 331 PANTHER TRANSCRIPTION FACTOR FAMA 9 331 IPR044283 GO:0003700|GO:0010052
Gso14g1349 331 Pfam Helix-loop-helix DNA-binding domain 103 154 IPR011598 GO:0046983
Gso14g1349 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 102 153 IPR011598 GO:0046983
Gso14g1349 331 MobiDBLite consensus disorder prediction 188 207 - -
Gso14g1349 331 MobiDBLite consensus disorder prediction 53 105 - -
Gso14g1349 331 MobiDBLite consensus disorder prediction 81 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g1349 Gso-Chr14 39482268 39485707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g1349 9 311 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 50.140 9.92e-83 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso14g1349 HLH 4.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g1349 K20558 - gmx:100789392 592.038