Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g1277 ATGGCCAATTCTTCGGCAGCTGCTGAGGACATAACCAATCGTCTTCGTGTTAATTACTGGAAGAAAGATGAGGATGTAAAGCTCTTGCAACAGGTTCGAGAACATGGTCCACAAAACTGGAGATCAATTGCTTCTCATCTAGAAGGAAGAACTGCCAAAAGCTGCAGATTGAGATGGCGCAATCATCTCGACCCTCGAGTGAACAGAAACCCTTTCACTGGAGAGGAAGAGGAGAGGCTGCTTGCAGCGCACGAAGTGTATGGAGCGAGATGGGCGCTCATATCCAAGCTCTTCAACGGCAGGACGGATAATGCTGTGAAGAATCACTGGCATGTTATGAGGGCGAGAAAGAGAAGGGAATCTAAGCAGAAAAACTGGCCAGGGGTATTTCAGGATTCATACGCTTCATCCTCCAGCAACACTGTTCTCCATCCAAATGGACCAAACCCTCATGACATGGTGTGCCCCAGTAATGGTTCTTCGAGCTCTGCCAAGTTTGGAACGATACCATCCTTCGCAGACTCTACTCCTGTGAATGGGAGTGATCATTTTGGACTATTCAATGGTGCTGATGATGCAATGCTTCAAAGGAGTTTGTTCGATAACTCGTTCGCGGAGTTCGGGTCTTCTTCTTCGTCAGTGCAAGTGCAAGCAGATGAGGAGTCAAATGGTAGTGGACAAAAAGAAGTTCCTTTCTTTGATTTTCTTGGTGTTGGTGATGACCAGTGA 729 0.4705 MANSSAAAEDITNRLRVNYWKKDEDVKLLQQVREHGPQNWRSIASHLEGRTAKSCRLRWRNHLDPRVNRNPFTGEEEERLLAAHEVYGARWALISKLFNGRTDNAVKNHWHVMRARKRRESKQKNWPGVFQDSYASSSSNTVLHPNGPNPHDMVCPSNGSSSSAKFGTIPSFADSTPVNGSDHFGLFNGADDAMLQRSLFDNSFAEFGSSSSSVQVQADEESNGSGQKEVPFFDFLGVGDDQ* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g1277 242 ProSiteProfiles Myb-like domain profile. 12 63 IPR001005 -
Gso14g1277 242 CDD SANT 71 113 IPR001005 -
Gso14g1277 242 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Gso14g1277 242 PANTHER MYB PROTEIN-RELATED 2 240 - -
Gso14g1277 242 MobiDBLite consensus disorder prediction 211 233 - -
Gso14g1277 242 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 67 IPR017930 -
Gso14g1277 242 CDD SANT 20 63 IPR001005 -
Gso14g1277 242 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Gso14g1277 242 Pfam Myb-like DNA-binding domain 20 80 - -
Gso14g1277 242 SMART sant 68 116 IPR001005 -
Gso14g1277 242 SMART sant 16 65 IPR001005 -
Gso14g1277 242 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 118 IPR017930 -
Gso14g1277 242 Gene3D - 70 129 - -
Gso14g1277 242 Gene3D - 18 68 - -
Gso14g1277 242 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 2 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g1277 Gso-Chr14 34136060 34138366 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g1277 19 239 MYB Transcription Factor Family AT1G69560 38.589 8.28e-46 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso14g1277 Myb_DNA-bind_6 2.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g1277 K09422 - gmx:102660725 497.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g2027 4 50644897 50646717 Gso14g1277 14 34136060 34138366 PCT