Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g1235 ATGGAAGCTGAGGATGGAAGTAGCAACGGTGATAATGGTGAAGGGGTTGGGTTGGATCGGAGGTTGGGTTCTGAAGATGGAGATAATGGGGGGAGAATTTTAGGTGGAAGTGGTGTTGCAGAAGGCGAAGAAGATCGGGGCTTGAAGGATAGAGCTGTAAGTTATGGGGTGGCAATTGGAGGTGAAGAAGTTCAGGATCTGAAGAAGGAAGCTGTAGATAATGGGGTGGCGGTTGAAGGTGGAGATGGTCTTGCTGAAGGTGAAGAAGTTCAGGACTTGAAGAATGAAACTGTAAATAATGGGATGGAAACTGAGGGTGGAAATGGTGTTGCTGAAGGCGAAGTTTGGACCTTGAAGAATGGCGTTATAAATAGTGGGGTGGCAATTGCTGATGGGAGTGCTGCTGCTGAAGATGGAGAGGTTTCAGGCTCAAAGAATGAAGTTAACGGGGTGGCATTTGCTGATGGGAATGGTGTTACTGAACATGGAGAAGTTTGGGGATCAAAGAATGAAGCTGTAAATAATGAGGTGGCAATTGTTGATGGGAATGGTGTTGCTTACAGTGGAGAAGTTCATGGCTCAAAGAATGGAGCTGTAAATAATGAGGTGGTCATTGCAGATGGGAATGGTGTTACTGAAGGTCAAGAGGATCACTGCTTGAAGAATGAAACTGTTAATAATGTAGTGGCAAATGCAGATGAAGGGAACTCTGGTGCAGTTGAGTGTTTTCAAACATACAAGAGGCGCAAGCATGCAAAGTCAAGTTCAGAATTTAAAGTCCAGGAGAACAGCAGAAAACATATGGGAGCTGCAAGTCAACTGTTGGTACAGGCGGTGAAGAAACCATTTGATTTAGCTGTTGGCAACACTTCAAAAGATCATTCACATGACCATTGGGGGAATGTTGTACTAAAGCATTTATATCATTCATTAGGCAATGACAATGGTGGCATGAAGTGGTGTATAAGGGAAGCACTCATGAGCTGTCCTAAAATTAGTTGTGCCCCTACAATGAAGGAAACTCTTAAAATTGTCAAAGATGGTCAGGAGTGCTCTCCGCAATTAGAAAGTTTGTTTTATAGATTACAGAGTGAAGCTAATGGACATGAAAATGTTGTGCACAACGGATTTTCTAGTGAGTCAAATGGCCGTGATACAACTGAGGGGTGCCAGCGTGTGTTCCGCGATATCTTAGCCTCTGAAAAGTTCAGTTCATTATGTAAAGTGCTACTTGAAAATTTCCAAGGAACGAAACCTGAAACTGTATTTGACTTTAGTTTGATAAACTCAAGGATGAAGGGGCAAGCTTATGAACAATCGCCTACACTTTTCCTATCTGATGTTCAACAGGTTTGGCGAAAGCTTCAAAGTACTGGAAATCAGATTGTTGCTATGGCCAGGAGTCTCTCCAACATGTCAAAAGCTTCCTTCTGTGAGCAGGTGGGAATTTCAGCGCAGAGTTCCTTTGAAGATGAAAAGGAAGTGCTCTGTAACCAGGAATCCATCTCTCACATGAAACCAGAGCAGACAGTAGAATGTGTTGCATTCAGACTTGGCACTTGCTGGCATTGTGGAGACAAAGCAGATGGGACAGACTGTTTGGTTTGTGATTCATGTGAGGAGATGTATCATCTGTCCTGTATTGAGCCTGCTGTGAAGGAAATACCCTACAAAAGCTGGTTCTGTGCCAATTGTACTGCTAATGGAATTGGATGTCGACACAAGAATTGTGTGGTGTGTGAACGGTTGAATGCCCTGAAGACCCTGGATGATATTGTTGGTGAGGAAAACATCCCTACAAATGAGGAAACACTGAATGAATTAGAAGAGAATTCAAATTGTACTTATGATGGGATTCAAATTTCCACAGATAGGAGAAACTCATCCGACTGCAAAATTTGTAAAATGGCGGTGGATGGTGAAAAAGTAAAAATCTGTGGTCACTCTTTTTGCCCTAGTAAATACTACCATGTAAGTTGTTTGTCAAGTAAGCAGCTAAAGTCATATGGTCACTGTTGGTATTGCCCTTCTTGTATATGCCAAGTTTGCCTCACCGACAAAGATGACAATAAGATTGTACTCTGTGATGCCTGTGATCATGCATACCACGTCTACTGTATGAAACCTCCACAAAATTCTATTCCGAAAGGGAAATGGTTCTGCATAAAATGTGAGGCAGGGATACAGGCAATACGCCAGGCAAGAAAGGCGTATGAGAGTAACAAAGGGAAAGTTGGTCAGAATGATTCAAAGCCAAATGAAGATATTGACAAGAAATGGAACAAAAAGCGAGGACGGGAATTAGACAATGTTGGAGGAATGATGGACATGCTTATAACTGCTGCAAATACTCTGAATTCTGAAGAGGACTTAAATGCAATGCTGATTGACTCAAAGAAAGCATTAACATGA 2412 0.4233 MEAEDGSSNGDNGEGVGLDRRLGSEDGDNGGRILGGSGVAEGEEDRGLKDRAVSYGVAIGGEEVQDLKKEAVDNGVAVEGGDGLAEGEEVQDLKNETVNNGMETEGGNGVAEGEVWTLKNGVINSGVAIADGSAAAEDGEVSGSKNEVNGVAFADGNGVTEHGEVWGSKNEAVNNEVAIVDGNGVAYSGEVHGSKNGAVNNEVVIADGNGVTEGQEDHCLKNETVNNVVANADEGNSGAVECFQTYKRRKHAKSSSEFKVQENSRKHMGAASQLLVQAVKKPFDLAVGNTSKDHSHDHWGNVVLKHLYHSLGNDNGGMKWCIREALMSCPKISCAPTMKETLKIVKDGQECSPQLESLFYRLQSEANGHENVVHNGFSSESNGRDTTEGCQRVFRDILASEKFSSLCKVLLENFQGTKPETVFDFSLINSRMKGQAYEQSPTLFLSDVQQVWRKLQSTGNQIVAMARSLSNMSKASFCEQVGISAQSSFEDEKEVLCNQESISHMKPEQTVECVAFRLGTCWHCGDKADGTDCLVCDSCEEMYHLSCIEPAVKEIPYKSWFCANCTANGIGCRHKNCVVCERLNALKTLDDIVGEENIPTNEETLNELEENSNCTYDGIQISTDRRNSSDCKICKMAVDGEKVKICGHSFCPSKYYHVSCLSSKQLKSYGHCWYCPSCICQVCLTDKDDNKIVLCDACDHAYHVYCMKPPQNSIPKGKWFCIKCEAGIQAIRQARKAYESNKGKVGQNDSKPNEDIDKKWNKKRGRELDNVGGMMDMLITAANTLNSEEDLNAMLIDSKKALT* 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g1235 803 Pfam PHD-finger 679 725 IPR019787 -
Gso14g1235 803 Pfam PHD-finger 521 567 IPR019787 -
Gso14g1235 803 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 684 750 IPR013083 -
Gso14g1235 803 SUPERFAMILY FYVE/PHD zinc finger 679 731 IPR011011 -
Gso14g1235 803 MobiDBLite consensus disorder prediction 1 47 - -
Gso14g1235 803 ProSiteProfiles Zinc finger PHD-type profile. 518 568 IPR019787 -
Gso14g1235 803 SMART PHD_3 682 725 IPR001965 -
Gso14g1235 803 SMART PHD_3 630 679 IPR001965 -
Gso14g1235 803 SMART PHD_3 520 566 IPR001965 -
Gso14g1235 803 MobiDBLite consensus disorder prediction 748 763 - -
Gso14g1235 803 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 619 683 IPR013083 -
Gso14g1235 803 MobiDBLite consensus disorder prediction 739 763 - -
Gso14g1235 803 ProSitePatterns Zinc finger PHD-type signature. 521 565 IPR019786 -
Gso14g1235 803 PANTHER HISTONE ACETYLTRANSFERASE 301 790 - -
Gso14g1235 803 PANTHER D4, ISOFORM A 301 790 - -
Gso14g1235 803 Gene3D - 408 569 - -
Gso14g1235 803 ProSiteProfiles Zinc finger PHD-type profile. 677 727 IPR019787 -
Gso14g1235 803 SUPERFAMILY FYVE/PHD zinc finger 518 566 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g1235 Gso-Chr14 29561961 29581984 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g1235 679 742 C2H2 Transcription Factor Family AT3G01460 48.438 3.26e-14 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gso14g1235 PHD 3.3e-13 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g1235 - - gmx:100810450 1636.31