Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g1220 ATGTTTCATGATTCTCATCACCTTAGCCTATTCCCCTGTGTGAAGTTTTGTTGTAACAAGTGCGACCGCGTCATGTCGAGGATATGCGTGAAGAATCTCCCAAAAGATGTTGGAGAGGACGAACTGCGGGAATTCTTTTCCGGGAAAGGAGGAATAATCACCGATGTCAAGCTTATGCGTACCAAAGATGGTAAGAGTCGCCAATTTGCGTTTATCGGATATCGTACTGAAGATGAAGCTCAGGAAGCCATTCGATATTTCAATAAAAATTTCCTTCGGACATCTAGAATTATTTGTGAGGTGGCTCGAAAGCATGGGGATGCAAATCTTCCTCGTCCGTGGAGTCGACATTCGAAGAAGGAAGACGATAAAGTGACTGCCCCGGATTTGGAGAAACCTTCTAGAGCTAAGGGACAAGGAGAAAATTCGAAGGGTGGTGTTGGTGATGATGTTGATGACCCACAGCTTCAGGATTTTCTTCAGGTCATGCAGCCTCGGGTTAAGTCTAAAATGTGGGCGAATGATACGTCGATTGTGACCAATGTTGGCAACAAACAAGCAATGCCAAATAAGGATAATGATGGGGCATCGGTTGCAAGTGATCAGAGTGGCTCATTCGAAGATGGTTTTCTGGAGGATTCTGAACCCAACAAGTCACATGAGCCTGAACGTGATGAAGTCATTTCTGATATGGACTATTTCAAGAGTAGGGTGACCAAAGAGTGGTCTGATTCTGAAAGTAGTGACGATGAAGATGATGATGATGACAATGATTCCTCATGTATTGACAATGATAGAGATGATCATAGTGATGCTGGTGAAGATGACGAGAATTGTGATCCAAGAAATGGTGTTCAAGAGGTAGACCTAGAGGGTAAAGAAGATACTAGTGGAGAGGATGTTACCCATGGAAAGACTCAAGTTAATGTCACTGAGCAAGGGGGGCAATTATCAAAATCAGAAGACAATAAAGGAGTTTTTGATTCCTGTCGGTTGTTTGTCCGTAATCTGCCATATATGACCACTGAGGAGGAACTGGAAGAACATTTCAGTCGCTTTGGAAGTGTCTCACAGGTTCATTTAGTTGTTGATAAAGATACAAAACGATCCAAAGGAATAGCATATATTCTTTATACAGCTCCAGATATAGCAGCCAGGGCTCAAGAAGAGTTAGACAATTCAATCTTTCAAGGAAGATTATTGCATGTAATGCAAGCTTTACAAAGACATTCAGATAATCAAGAGAACAATGTTTTGAAGGACCAAAGATCTAAAACCCTCAAACAACAGAGAGAGGAAAAACGGAAAGCTGATGAAGCTAGTGGAGATACTAGAGCATGGAATAGTCTGTTCATGCGTCCTGATACAGTTGTGGAAAACATCGCTCGGAAATATGGTGTCAATAAAGGTGATTTACTTGACCGAGAAGCTGATGATCTTGCTGTACGTATCGCTCTGGGAGAGACTCAAGTGATTTCAGAGACAAAAAAGGCATTTAAAAATGCTGGAGTGAATGTGGAGGCTTTGGAGGAACTTGCTAATAATAAAACAGATGGATTAAAAAGAAGTAATCATGTGCTTTTAGTTAAGAACTTGCCATATGGTTCTACAGAAAATGAACTTGCAAAGATGTTTGGGAAATTTGGTAGTTTGGATAAAATAATTCTCCCTCCAACAAAGACATTGGCACTGGTTGTTTTCCTCGAACCAGCGGAAGCTCGAGCAGCTTTTAGAGGTTTAGCTTACAAGCGTTACAAAGATGCTCCATTATACTTGGAGTGGGCTCCTTCCAATATTCTTAGCCAATGTTCAACTTCTAAAAATAATGCAATGAATAGTGTAATTGGTGAAAATGATGCCAAGAGGCAGATGTTGGAGCAACAGGTGGAAAGAATAACAGATGTGGATATTGACCCAGACAGAGTACAGGCTCGGTCCCTGTTTGTCAAGAATCTAAATTTCAAGACTATAGATGAAAGTCTAAGGAAACATTTTAGTGAACACATGAAAGAGGGAAGAATTTTGAGTGTCAAGGTGAAGAAGCATCTGAAAAATGGGAAAAATGTTTCTATGGGGTTTGGATTTGTTGAGTTTGACTCCCCTGAAACTGCTACAAATGTTTGCAGAGATTTACAGGGGACTGTTTTGGACAGCCATGCTCTAATTTTACAACCTTGTCATGTCAAGAATGATGGGCAAAAACAAAAGAAAATTGATAAGGATAGGAGTTCAACAAAATTGCACATAAAAAATGTTGCTTTTGAGGCAACAGAGAAGGACCTGAGACGATTGTTTAGCCCATTTGGCCAGATTAAAAGCTTAAGGTTGCCAATGAAGTTTGGAAGCCATAGAGGCTTTGCTTTTGTAGAGTATGTTACTCAGCAGGAGGCAAAAAATGCCCGCGAGGCACTTGCAAGCACCCATCTCTATGGGAGGCACCTGTTGATAGAGCACGCAAAAGAAGATGAGACTTTGGAAGAACTGCGGGCTAAAACAGCTGCCCAATTTAGTGATGAACAGAATGGATTTCAAAGTGCTATGAAATTATCCAAAAAAAGGAATCAAGTTGATATCTTGGATGAAGGGAATATGAAGTTTGGAAGAATGGCTGACTAG 2616 0.4083 MFHDSHHLSLFPCVKFCCNKCDRVMSRICVKNLPKDVGEDELREFFSGKGGIITDVKLMRTKDGKSRQFAFIGYRTEDEAQEAIRYFNKNFLRTSRIICEVARKHGDANLPRPWSRHSKKEDDKVTAPDLEKPSRAKGQGENSKGGVGDDVDDPQLQDFLQVMQPRVKSKMWANDTSIVTNVGNKQAMPNKDNDGASVASDQSGSFEDGFLEDSEPNKSHEPERDEVISDMDYFKSRVTKEWSDSESSDDEDDDDDNDSSCIDNDRDDHSDAGEDDENCDPRNGVQEVDLEGKEDTSGEDVTHGKTQVNVTEQGGQLSKSEDNKGVFDSCRLFVRNLPYMTTEEELEEHFSRFGSVSQVHLVVDKDTKRSKGIAYILYTAPDIAARAQEELDNSIFQGRLLHVMQALQRHSDNQENNVLKDQRSKTLKQQREEKRKADEASGDTRAWNSLFMRPDTVVENIARKYGVNKGDLLDREADDLAVRIALGETQVISETKKAFKNAGVNVEALEELANNKTDGLKRSNHVLLVKNLPYGSTENELAKMFGKFGSLDKIILPPTKTLALVVFLEPAEARAAFRGLAYKRYKDAPLYLEWAPSNILSQCSTSKNNAMNSVIGENDAKRQMLEQQVERITDVDIDPDRVQARSLFVKNLNFKTIDESLRKHFSEHMKEGRILSVKVKKHLKNGKNVSMGFGFVEFDSPETATNVCRDLQGTVLDSHALILQPCHVKNDGQKQKKIDKDRSSTKLHIKNVAFEATEKDLRRLFSPFGQIKSLRLPMKFGSHRGFAFVEYVTQQEAKNAREALASTHLYGRHLLIEHAKEDETLEELRAKTAAQFSDEQNGFQSAMKLSKKRNQVDILDEGNMKFGRMAD* 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g1220 871 MobiDBLite consensus disorder prediction 183 321 - -
Gso14g1220 871 CDD RRM3_RBM19_RRM2_MRD1 331 404 - -
Gso14g1220 871 SUPERFAMILY RNA-binding domain, RBD 644 822 IPR035979 GO:0003676
Gso14g1220 871 CDD RRM5_RBM19_like 645 726 IPR034423 -
Gso14g1220 871 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 96 IPR000504 GO:0003723
Gso14g1220 871 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 647 721 IPR000504 GO:0003723
Gso14g1220 871 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 527 588 IPR000504 GO:0003723
Gso14g1220 871 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 332 402 IPR000504 GO:0003723
Gso14g1220 871 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 748 814 IPR000504 GO:0003723
Gso14g1220 871 Gene3D - 19 154 IPR012677 -
Gso14g1220 871 Gene3D - 618 737 IPR012677 -
Gso14g1220 871 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 104 IPR000504 GO:0003723
Gso14g1220 871 PANTHER RNA-BINDING PROTEIN 19-RELATED 26 848 - -
Gso14g1220 871 SUPERFAMILY RNA-binding domain, RBD 323 415 IPR035979 GO:0003676
Gso14g1220 871 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 330 408 IPR000504 GO:0003723
Gso14g1220 871 SUPERFAMILY RNA-binding domain, RBD 522 604 IPR035979 GO:0003676
Gso14g1220 871 MobiDBLite consensus disorder prediction 183 204 - -
Gso14g1220 871 MobiDBLite consensus disorder prediction 412 443 - -
Gso14g1220 871 Gene3D - 738 845 IPR012677 -
Gso14g1220 871 Gene3D - 517 617 IPR012677 -
Gso14g1220 871 MobiDBLite consensus disorder prediction 211 244 - -
Gso14g1220 871 CDD RRM6_RBM19_RRM5_MRD1 745 819 - -
Gso14g1220 871 MobiDBLite consensus disorder prediction 108 138 - -
Gso14g1220 871 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 26 848 - -
Gso14g1220 871 SUPERFAMILY RNA-binding domain, RBD 22 115 IPR035979 GO:0003676
Gso14g1220 871 MobiDBLite consensus disorder prediction 108 153 - -
Gso14g1220 871 MobiDBLite consensus disorder prediction 302 321 - -
Gso14g1220 871 MobiDBLite consensus disorder prediction 245 261 - -
Gso14g1220 871 SMART rrm1_1 526 593 IPR000504 GO:0003723
Gso14g1220 871 SMART rrm1_1 746 817 IPR000504 GO:0003723
Gso14g1220 871 SMART rrm1_1 331 404 IPR000504 GO:0003723
Gso14g1220 871 SMART rrm1_1 646 724 IPR000504 GO:0003723
Gso14g1220 871 SMART rrm1_1 27 100 IPR000504 GO:0003723
Gso14g1220 871 MobiDBLite consensus disorder prediction 414 442 - -
Gso14g1220 871 CDD RRM4_RBM19_RRM3_MRD1 525 596 - -
Gso14g1220 871 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 525 597 IPR000504 GO:0003723
Gso14g1220 871 CDD RRM1_MRD1 26 102 - -
Gso14g1220 871 Gene3D - 215 421 IPR012677 -
Gso14g1220 871 MobiDBLite consensus disorder prediction 275 301 - -
Gso14g1220 871 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 645 728 IPR000504 GO:0003723
Gso14g1220 871 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 745 821 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g1220 Gso-Chr14 28840739 28850582 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g1220 638 837 Eukaryotic Initiation Factors Gene Family AT1G49760 28.972 1.41e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g1220 K14787 - gmx:100798742 1714.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1220 14 28840739 28850582 Gso13g0168 13 10298914 10316986 GST