Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g1207 ATGGAACGTGAAGAAGGCAAACAACCTCCCCAAAAAACCCCATTACACAATCAACATGAGCAAGCTAATTCTGACAACAATTTTGTTCAAGAAAATAACTTGCAAGAGCAAAGTGGGACATTCACAACTTTTGCATCATTTGAAAGTGAAACTGAGGGTGAGTCCTCTTTTGATGACAATGATTATGATGCTGATTTTTTCCTGAGCCAAGAGTTCGAATCAGAACTTCAATTTCTTGAGAGTGAAGGAAGCAATGACAACGGCGATGATTATGATAATGAAGATGACGAAGATATGGAAGAAGATGAGATCGATGTAGATGAATTGACTTATGAGGAATTGATTGAGTTGGGAGATTTTATAGGACAAGAGAAGAGAGGGTTGTCAGCACATGAGATCTGTTCATGCTTGCATTCTCACACTTTCCATTCTGCTGAAAACAAAAGTGGAATTGATCGTTGTGTGATTTGTCAGGTCGAATATGAAGAAGGTGAATCTTTGGTGGCAATTCAGTGTGAGCACCCTTATCACACAGATTGCATAAGCAAGTGGCTCCAAATTAAGAAGGTTTGCCCAATATGTAACATCGAAATTTCAGCTCCCAAGATGTAA 612 0.3889 MEREEGKQPPQKTPLHNQHEQANSDNNFVQENNLQEQSGTFTTFASFESETEGESSFDDNDYDADFFLSQEFESELQFLESEGSNDNGDDYDNEDDEDMEEDEIDVDELTYEELIELGDFIGQEKRGLSAHEICSCLHSHTFHSAENKSGIDRCVICQVEYEEGESLVAIQCEHPYHTDCISKWLQIKKVCPICNIEISAPKM* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g1207 203 Pfam RING-H2 zinc finger domain 152 195 IPR024766 GO:0008270
Gso14g1207 203 SUPERFAMILY RING/U-box 153 200 - -
Gso14g1207 203 SMART ring_2 154 194 IPR001841 -
Gso14g1207 203 MobiDBLite consensus disorder prediction 1 41 - -
Gso14g1207 203 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED-LIKE 1 201 - -
Gso14g1207 203 MobiDBLite consensus disorder prediction 11 41 - -
Gso14g1207 203 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 201 IPR013083 -
Gso14g1207 203 MobiDBLite consensus disorder prediction 85 101 - -
Gso14g1207 203 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 201 IPR045191 GO:0061630
Gso14g1207 203 ProSiteProfiles Zinc finger RING-type profile. 154 195 IPR001841 -
Gso14g1207 203 MobiDBLite consensus disorder prediction 79 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g1207 Gso-Chr14 28393795 28395405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g1207 101 198 C3H Transcription Factor Family AT3G63530 47.525 7.33e-28 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g1207 K19045 - gmx:100780686 343.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1207 14 28393795 28395405 Gso13g0155 13 10132048 10133124 GST
Gso4g2080 4 51233780 51234803 Gso14g1207 14 28393795 28395405 PCT