Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso14g1156 | ATGCCAGTGAACCGTGGCCAAGGCCAAACCACAAGGTGGTATCAGCTATGCTTTATTCCCACTAGTTCAGACAATTCAGATGATTCAGACATAGAATCTGTAGTCCTAACTCCTAGTAACCTAACTCAAACTAGTAGTACATGGCAAGAACTTTCTCCGCCGATACCACCAGAATCAGAACCTGAAATTGATTGGAGTTTACCACCACCACCACCACCACCACCACCACCGTCACCGCCACCGCCACTGCCAAATTTTCTACCACTTCAGAGAGTTGTACTAACTCTTGGTACTCCAACTAGTAGTACATGGCAAGAACTTTTTCCACCGTCATCACCATTGTCGTCACCACCACGTCCAACTCGAATTAGTAGTACATGGCAAGAACTTTCTCCGCCATCTTCACCATTGTCATCACGACCACCAACAAACCTAGAACCTGAAATTGATATGAGTTTGTCATTGTTATCACCACCACCACTGTTACCAGATTTTCTACAGTCTCGGCCTCTTCAGAGAGCTTCGGCTAGAACATTTAATATTGAAGTACAACAAGATAGACACCAACCTCCAAGTCCAAGTCATGTGTTTGAAGGTGATCAAAGTGACTGCTCAATGAATGTCAAGAATGGCATTACAAGGGTGAGAGTCTCAGAGATAGATAAACTCTTTCATTGCCCCATTTGCATGGATGAGTTTAAAGTGGGTGGTGACAAAGCATGCCAGCTACCCTGCACCCACACCTACTGTTCTGAATGCATTCTTCGTTGGCTTGACAACAATAAAACATGTCCAGTTTGCAGGCTTCAGTTGAATGGTTGTAGTTTTGATAGCATAAATTGCAATAATGGTTTGGACTCACAACCTCAAATTCCGTCCCTGCCATCACGGTCACCAATAGTTCATAATGATTCGCCCCAGCGTTGGGAGAACTTTTCCCAATCCCCTCCCTACCTTTTACAAGGTATAGAGAATAGCATCAATGATAATAATGGTTTGGACTCACAACCTGAAATTCTACTGCCGCCGCCGCCACCACCACCATCAGCTCATAATGACTTGCACCGGCCCTGGGAGTACTACTTTGAATCTCCCTACCTTATAGTACAAGATATAGAGAATAGTGAAGGTGGTAACTCAGATGAAGCTGATTATGATAGTGCATGTGATGAGCTTGGCGATCCTCATGAAGATGGAGCTTCTCAGAGTGTTCCTGCTCCACTAACTTAA | 1230 | 0.4447 | MPVNRGQGQTTRWYQLCFIPTSSDNSDDSDIESVVLTPSNLTQTSSTWQELSPPIPPESEPEIDWSLPPPPPPPPPPSPPPPLPNFLPLQRVVLTLGTPTSSTWQELFPPSSPLSSPPRPTRISSTWQELSPPSSPLSSRPPTNLEPEIDMSLSLLSPPPLLPDFLQSRPLQRASARTFNIEVQQDRHQPPSPSHVFEGDQSDCSMNVKNGITRVRVSEIDKLFHCPICMDEFKVGGDKACQLPCTHTYCSECILRWLDNNKTCPVCRLQLNGCSFDSINCNNGLDSQPQIPSLPSRSPIVHNDSPQRWENFSQSPPYLLQGIENSINDNNGLDSQPEILLPPPPPPPSAHNDLHRPWEYYFESPYLIVQDIENSEGGNSDEADYDSACDELGDPHEDGASQSVPAPLT* | 410 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso14g1156 | 409 | MobiDBLite | consensus disorder prediction | 338 | 352 | - | - | |
| Gso14g1156 | 409 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 210 | 296 | IPR013083 | - | |
| Gso14g1156 | 409 | MobiDBLite | consensus disorder prediction | 20 | 53 | - | - | |
| Gso14g1156 | 409 | Pfam | Ring finger domain | 225 | 268 | IPR001841 | - | |
| Gso14g1156 | 409 | MobiDBLite | consensus disorder prediction | 54 | 87 | - | - | |
| Gso14g1156 | 409 | MobiDBLite | consensus disorder prediction | 118 | 134 | - | - | |
| Gso14g1156 | 409 | PANTHER | RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING | 107 | 268 | - | - | |
| Gso14g1156 | 409 | PANTHER | GB|AAD18119.1-RELATED | 107 | 268 | - | - | |
| Gso14g1156 | 409 | SMART | ring_2 | 226 | 267 | IPR001841 | - | |
| Gso14g1156 | 409 | MobiDBLite | consensus disorder prediction | 103 | 147 | - | - | |
| Gso14g1156 | 409 | SUPERFAMILY | RING/U-box | 225 | 271 | - | - | |
| Gso14g1156 | 409 | MobiDBLite | consensus disorder prediction | 371 | 409 | - | - | |
| Gso14g1156 | 409 | MobiDBLite | consensus disorder prediction | 20 | 87 | - | - | |
| Gso14g1156 | 409 | MobiDBLite | consensus disorder prediction | 324 | 355 | - | - | |
| Gso14g1156 | 409 | ProSitePatterns | Zinc finger RING-type signature. | 245 | 254 | IPR017907 | - | |
| Gso14g1156 | 409 | ProSiteProfiles | Zinc finger RING-type profile. | 226 | 268 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso14g1156 | Gso-Chr14 | 26544733 | 26545962 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gso14g1156 | 226 | 277 | C3H Transcription Factor Family | AT5G41440 | 42.308 | 3.09e-11 | 58.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso14g1156 | K11982 | - | gmx:102665811 | 768.844 |