Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g1152 ATGGCCAATTGCAACATCATCTGTAACTATCCTTTCAAGAACCATTTACCAGTGTTCATCAACATGATGGTTCTTTCTTTCATTTCTAATGTTCAAGCCCAAGACAGTACTGACACAGATACCTTGCCTGCTGATTTTCCCCAACCAGTGCGTCCAAGCAAGGTGGTTGTAATAGTGGCTCTCTCAATATTGTTCACTTTCTCATTTCTCTTACTTCTCTACATAAGGTTCCGTAGAATCACCCCTCTTGAACTCATCCAAAGAAGTAGCCATCACTCTCCAAATTTTCAAGCAACAACTCGATCGAATTCGAGGTCACGGCTTTCTGGGATAGACAGACAAGTGATTGAAGCACTTCCATTTTTCAGGTTCTCTTCCCTCAAGGGGTCCAAACAAGGCCTAGAGTGTACGGTTTGCTTGTCACAGTTTGAGGACACAGAGATTCTTAGGCTCTTGCCAAAGTGCAAACATACTTTCCACATGAATTGCATTGACAAGTGGCTTGAAAGTCACTCTAGTTGCCCTCTTTGCAGGAACAGTATCGACCCTTTAGACATCAAGAACTTCACCTACTCAATCAGTTCAAGGTCCCTAAGAGTTCCTTCGAATTTAACCGAGGACACTAACCTTGAAATCTTTGTTCACAGGGAATCATCATCAAGGTTTAACATGGGAAGCAGGTTTTGGAATTTGGGAAGGAACAACAAAGAAGAACGTCTCCTTGATCAACAGGTTGATGGCAAACACATGCATAAGTTCAATCACAAAATCGTGGTCTCTGATGTTGTTACAAGGAGCAGGTGGAGTGATCTAAACTCTTCGGACATGTTATCATTGAACAGTGAGATGCTTCTTGACATGTCAAGCAGAAGATTCTCTCCCTCTAATGAAATGATTCGTGGAGATTCAAGCCTTCCCTTTATTTTCAATGATGATGAAAGTTCATTTACGTTATTGAATACTGCTGAGAAGAGATCTATGTCTGAGATTGCTCGTGTTCCTAGGTTCATAGAAACGTGCAAGCAGAATAGAACGGAAGCAGGTGTGGCATCAAGTGGGAGCAACGAGAGGGAGGAGAGGTTGAGGAGGATTTGGTTGGGAATTGCTCAACGAACAGTGCAATGGTTTGTGGGACAAGAAAGAAACTCGAGAGAATTAAAGCACAAAAATTTAACTCCAAATGTTTGA 1188 0.42 MANCNIICNYPFKNHLPVFINMMVLSFISNVQAQDSTDTDTLPADFPQPVRPSKVVVIVALSILFTFSFLLLLYIRFRRITPLELIQRSSHHSPNFQATTRSNSRSRLSGIDRQVIEALPFFRFSSLKGSKQGLECTVCLSQFEDTEILRLLPKCKHTFHMNCIDKWLESHSSCPLCRNSIDPLDIKNFTYSISSRSLRVPSNLTEDTNLEIFVHRESSSRFNMGSRFWNLGRNNKEERLLDQQVDGKHMHKFNHKIVVSDVVTRSRWSDLNSSDMLSLNSEMLLDMSSRRFSPSNEMIRGDSSLPFIFNDDESSFTLLNTAEKRSMSEIARVPRFIETCKQNRTEAGVASSGSNEREERLRRIWLGIAQRTVQWFVGQERNSRELKHKNLTPNV* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g1152 395 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 25 297 - -
Gso14g1152 395 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 303 389 - -
Gso14g1152 395 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 184 IPR013083 -
Gso14g1152 395 ProSiteProfiles Zinc finger RING-type profile. 136 178 IPR001841 -
Gso14g1152 395 Pfam Ring finger domain 135 178 IPR001841 -
Gso14g1152 395 SUPERFAMILY RING/U-box 115 184 - -
Gso14g1152 395 SMART ring_2 136 177 IPR001841 -
Gso14g1152 395 CDD RING-H2_PA-TM-RING 135 178 - -
Gso14g1152 395 PANTHER RING-H2 FINGER PROTEIN ATL4J 303 389 - -
Gso14g1152 395 PANTHER RING-H2 FINGER PROTEIN ATL4J 25 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g1152 Gso-Chr14 26299018 26300391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g1152 40 382 C3H Transcription Factor Family AT2G20030 41.444 9.52e-76 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g1152 K10664 - gmx:100803881 759.214