Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g1148 ATGGAATCACCCAACTCTTCCCCAATTTTCCCACAATTCACCTTCGACACCAACAAGAACAACAACAACCCGGACAACTTCATTGTGGAGGACCTCTTGGACTTCTCCAACGACGACGTTGTCATCACCGACGCCACCTTCGACTCCATCACGACCGACTCTTCCACCGTCACCACCGTCGTTGACAGCTGCAACTCCTCCTCCTTCTCTGGCTCCGACCCCAATACCGTCCCTGATGTCGGTAGCCAGAATCTATCCGACGGCCATTTCTCCGGTGACCTCTGCGTTCCGTATGATGACATCGCGGAGTTAGAATGGCTTTCGAATTTCGTGGAGGAGTCGTTTTCGAGCGAGGACCTGCAGCAGATGCAGCTGATATCAGGCATGAATGCGCGAAACTACGACGTATCAGAGGCCCGCGAGTTCCACTACGAGCCCACCACCAGAAGCGGGCCCCACACCCCGGAGCCCACCACCAAAAGCGGCGGGCTCCACTATGAGCCCACCAGAAACAGCCCAATATTCAATTCGGAAGTGTCGGTTCCAGCCAAGGCCCGCAGCAAGAGGTCCCGCGGGCCCCCATGCAACTGGGCCTCGCGCCTCCTCGTCCTGTCCCCGACAACCTCATCGTCCTCGGACTCCGAGGTCACCGTTCCTGCTCCCGCCGAGCACGGGCCGGCCCCAGCAAAAAAGGCCGCAAAGGCCGGGCCGAGGAAGAAGGACAGCGGCAGCGATGGCAACGGCAGTGGCGGGGACGGGCGCAGGTGCTTGCACTGCGCCACGGACAAGACCCCGCAGTGGCGGACCGGGCCCATGGGACCGAAGACTCTGTGCAACGCTTGTGGCGTGAGGTTCAAGTCGGGCAGGCTGGTGCCCGAGTACAGGCCCGCGGCGAGCCCGACTTTTGTTCTGACTAAGCACTCCAACTCGCACCGCAAGGTGCTGGAGCTGCGAAGGCAGAAGGAAATGGTGCGGGCCCAGCAACACCACCAGCAGCACCACCAGCAACAACAACAGTTCCTACACCACCACCACCATAATCATAACCATCACCATCATCAACATCATCAGAACATGATGTTTGATGTATCCAACGGTGACGATTACTTGATCCACCAACCCGTGGGCCCCGATTTCAGGCAGCTTATCTAG 1152 0.5894 MESPNSSPIFPQFTFDTNKNNNNPDNFIVEDLLDFSNDDVVITDATFDSITTDSSTVTTVVDSCNSSSFSGSDPNTVPDVGSQNLSDGHFSGDLCVPYDDIAELEWLSNFVEESFSSEDLQQMQLISGMNARNYDVSEAREFHYEPTTRSGPHTPEPTTKSGGLHYEPTRNSPIFNSEVSVPAKARSKRSRGPPCNWASRLLVLSPTTSSSSDSEVTVPAPAEHGPAPAKKAAKAGPRKKDSGSDGNGSGGDGRRCLHCATDKTPQWRTGPMGPKTLCNACGVRFKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMVRAQQHHQQHHQQQQQFLHHHHHNHNHHHHQHHQNMMFDVSNGDDYLIHQPVGPDFRQLI* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g1148 383 MobiDBLite consensus disorder prediction 201 217 - -
Gso14g1148 383 Pfam GATA zinc finger 256 289 IPR000679 GO:0006355|GO:0043565
Gso14g1148 383 ProSitePatterns GATA-type zinc finger domain. 256 281 IPR000679 GO:0006355|GO:0043565
Gso14g1148 383 SMART GATA_3 250 300 IPR000679 GO:0006355|GO:0043565
Gso14g1148 383 MobiDBLite consensus disorder prediction 164 178 - -
Gso14g1148 383 MobiDBLite consensus disorder prediction 144 257 - -
Gso14g1148 383 PANTHER GATA TRANSCRIPTION FACTOR 13 383 - -
Gso14g1148 383 MobiDBLite consensus disorder prediction 336 355 - -
Gso14g1148 383 PIRSF Txn_fac_GATA_plant 10 347 IPR016679 GO:0003677|GO:0005634|GO:0045893
Gso14g1148 383 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 251 314 - -
Gso14g1148 383 MobiDBLite consensus disorder prediction 331 356 - -
Gso14g1148 383 PANTHER GATA TRANSCRIPTION FACTOR 13 383 - -
Gso14g1148 383 CDD ZnF_GATA 255 302 IPR000679 GO:0006355|GO:0043565
Gso14g1148 383 Gene3D - 248 339 IPR013088 GO:0006355|GO:0008270
Gso14g1148 383 ProSiteProfiles GATA-type zinc finger domain profile. 250 286 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g1148 Gso-Chr14 25858145 25860541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g1148 26 383 C2C2-Gata Transcription Factor Family AT5G25830 49.194 8.07e-97 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gso14g1148 GATA 3.4e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g1148 - - gmx:100800146 610.142