Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g1053 ATGGGAAATCCGAAGACAGAAGAGGAAAGGATTGAAAGAGTAATTCGGAGTCTTTTAAAACTTCCAGAAAATAGAAGATGCATCAACTGCAATCTTTTGGGACCACAATATGTGTGTACAACTTTCTCAACATTTGTCTGCACAAATTGCAGTGGAATACACCGGGAGTTTACTCATAGAGTTAAATCTGTGTCAATGGCTAAATTTACTCCAGAAGAAGTCACTGCTCTTCAAGCAGGTAGCAATGAGAGAGCAAAGCAGATTTATTTTAAAGAATGGAATCCTCTGCGCCATTCTTATCCCGATTCCTGTAATATACACAAACTTCGAGATTTCATTAAGCATGTATATGTGGAAAGAAGATATACTGGTGAAAGTTGTGGTAGCAGTCTTCCTAGGATTAAAATGAGTGAGAAGGAGGAGTCTTTTGCAAGTAAGAAAAGTAGTTCATTTCGTTTTGAAATCATAAGTCCTCATTCAAGTTCGGGTCCAAGAAGTGATGACAAGAATCTCAGATATATATATGATGAAAGCAGAAGTCCTAGATATACACAAAAGTATGCAAGGCACACCGGCCTCTCCAGAAATCCTATAAAAATTGAAGTTGTTGATGACAGGTTCCAAGATGATGAACGTAGAAATCGCAGGCTTTCAAACATAGCATCAAAGCTAAAACAAATTTCAATTGACGGTCAGAAGAATGTGGACAAATCCCAACTTCCCGTTGAACGTCCTTTGGGAGAAATATTAAGGGAGAATGCTTCATCTCTACAAGCCACACATTCTTGTGGCAAGGGTTCTGTTGAGGAAAATCTATCTGAACAAAAAAATAATAATCCAGAAAGGTCCATTGATTTGAGTTCTAAGTCTCAGGCTACTCATTCTGCTGCTGGAGGTAGACCGGAATTACCACATACAACACAATCAAATGAAAGTAACTGGGCCATATTTGGAGCTTCAACAGAGAACAATGATCCTACAACTCCAGACACAAATACCTCGAAACCTTCAACAAAAAAGACAGCATCTGAAGCAGCAATACCTGCAAAAAATCCTGTAGACCTTTTACTTTTCGAATTATCAGGTCCTGTGACTCCAGTTACCGGTGGCATGTCACAAGCCGCAAGTGGTACTAATAATGATCCAACAACTACAACAGTAGATAATGGCACTACTTGGGACTTTCCATCTACTTCAGTAGGGCAGACAACTGCATCACCCAACAATACTAGTGTTTGGTCATTCACATCAACCCCAGCCACTGAGTCAGCACAGCCTTCTAACGAAGTTCCTCTACATACTGAAGTTTCATATGCATATAAAACATCAAGCATGCAATATGTTCCTTCTGTATCAACAGTTTGTAGTTCAACCACACAACCAATAAATTCACCAGTCAAAGATGTAGCTTCAAATAATCAGCCATCAGTTACTCCTAGTACAAATAACTCTTCATGGGGTTTTACTGAAATATCTTCTCAAACTACCTCAAAACCTACTCATGAAACCAGGTCTAGTGGAAGACTGGAACTTCCAGAGGTAACATATTTAGCCTCTGTCATTAGCTTTTTCTTTTAA 1578 0.3897 MGNPKTEEERIERVIRSLLKLPENRRCINCNLLGPQYVCTTFSTFVCTNCSGIHREFTHRVKSVSMAKFTPEEVTALQAGSNERAKQIYFKEWNPLRHSYPDSCNIHKLRDFIKHVYVERRYTGESCGSSLPRIKMSEKEESFASKKSSSFRFEIISPHSSSGPRSDDKNLRYIYDESRSPRYTQKYARHTGLSRNPIKIEVVDDRFQDDERRNRRLSNIASKLKQISIDGQKNVDKSQLPVERPLGEILRENASSLQATHSCGKGSVEENLSEQKNNNPERSIDLSSKSQATHSAAGGRPELPHTTQSNESNWAIFGASTENNDPTTPDTNTSKPSTKKTASEAAIPAKNPVDLLLFELSGPVTPVTGGMSQAASGTNNDPTTTTVDNGTTWDFPSTSVGQTTASPNNTSVWSFTSTPATESAQPSNEVPLHTEVSYAYKTSSMQYVPSVSTVCSSTTQPINSPVKDVASNNQPSVTPSTNNSSWGFTEISSQTTSKPTHETRSSGRLELPEVTYLASVISFFF* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g1053 525 Gene3D Arf GTPase activating protein 2 130 IPR038508 -
Gso14g1053 525 PANTHER ARFGAP/RECO-LIKE ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 513 - -
Gso14g1053 525 CDD ArfGap_AGFG 12 122 - -
Gso14g1053 525 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Gso14g1053 525 MobiDBLite consensus disorder prediction 302 341 - -
Gso14g1053 525 MobiDBLite consensus disorder prediction 257 295 - -
Gso14g1053 525 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Gso14g1053 525 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Gso14g1053 525 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Gso14g1053 525 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Gso14g1053 525 PANTHER ARFGAP/RECO-RELATED 1 513 IPR044820 GO:0005096
Gso14g1053 525 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 123 IPR001164 GO:0005096
Gso14g1053 525 MobiDBLite consensus disorder prediction 398 430 - -
Gso14g1053 525 MobiDBLite consensus disorder prediction 257 345 - -
Gso14g1053 525 MobiDBLite consensus disorder prediction 465 507 - -
Gso14g1053 525 MobiDBLite consensus disorder prediction 465 502 - -
Gso14g1053 525 Pfam Putative GTPase activating protein for Arf 13 123 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g1053 Gso-Chr14 18079544 18084960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g1053 1 104 C2H2 Transcription Factor Family AT4G05330 32.407 1.67e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g1053 - - gsj:114383885 986.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1053 14 18079544 18084960 Gso17g1726 17 32723901 32729695 GST