Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g1047 ATGCCTAAAAGTCACTTGCGGAAATTAGGTTCGAGCGGCACTTTGCCATTGTTGATGGAGCGGTCCGGGAGCTTAAACAGCAGTCAGCATGTTATAGAAATAGCTGGGAGCGCCGATGCTTCCACATCGTCTGCATCACATCATGATAGACATTTTAATGGCACAAATGTGACGCAGCATGAAGAAAGAATTAGCGGTGCAAGGATGCCTCTTTCTCAGCCTTCAGTTTCAGCAACTAGTGTATCTAATGGGTCAAATAGTCGAAACTCATCGTTCATAAGACGAGGGGATACTCGGCGGAATAGGAGTCCTGTGCATTCAGGGTTATGGATATCTATTGAGCTGGTCCTACTCCTGAGCCAGATTGTTGCATCTATAATTGTTTTGTCTTTGTCAAGGCATGAACATCCGCGTACCCCGTTGTTTCAATGGATCATTGGTTATGCTTCTGGATGTGCTGCTACCCTCCCTCTACTTTATTGGCGGTATTATCATCATAACCATATGCAAGAGCAAGAGTCATCTCAATCTAGGCAGACTTCTCCTCGGATTAATGATCCTTCAGGGACACTTCTTTTCAGTTCTAGAACTAATGGTGGAGAAGATGGTCAGTCTGCCGTTGCATCTTCCAGAAGCAATCAACCTTCATTATTGATGAATAGAAGAATGAAGACACTAGTGGAGTACTTCAAAATATCTTTAGATTGCTTTTTTGCTGTATGGTTTGTTGTTGGAAATGTATGGATCTTTGGGGGACATTCATCTGCCAATGAAGCTCCTAATTTGTACAGGTTATGTATAGTGTTTCTTGCATTTAGCTGCATTGGTTATGCTATGCCCTTCATTTTCTGTTCAACAATCTGCTGTTGTCTCCCTTGTATAATTTCTATCCTTGGGGTTAGAGAGGATATGTCACAAAACAGAGGGGCAACTTCTGAATCTATTAATGCTTTGCCGATTTACAAGTTCAAGATGAAGAAAAATAAAAGAAATGGCAATGGCAACTCAGCTGCTGCCGAAGGTGGAGTTGTGGCTGCAGGAACTGAAAAAGAGCATGTGATATCTGGAGAAGATGCGGTTTGCTGCATCTGCCTGGCAAAGTATGAGAATAATGATGAGCTGAGAGAATTGCCTTGTTCTCATCTTTTCCACAAAGACTGCGTCGATAAATGGTTGAAGATAAATGCATTATGCCCTCTTTGCAAGAGTGATGTTGGTGAGAACTTAACAGGATCGGTCTCTGGAGAAGATGCCAGCCAACAACAGGGTGAGAGCAGGGTTGAGAATGGCCTCACGAATACCTCAGTCTAG 1311 0.4302 MPKSHLRKLGSSGTLPLLMERSGSLNSSQHVIEIAGSADASTSSASHHDRHFNGTNVTQHEERISGARMPLSQPSVSATSVSNGSNSRNSSFIRRGDTRRNRSPVHSGLWISIELVLLLSQIVASIIVLSLSRHEHPRTPLFQWIIGYASGCAATLPLLYWRYYHHNHMQEQESSQSRQTSPRINDPSGTLLFSSRTNGGEDGQSAVASSRSNQPSLLMNRRMKTLVEYFKISLDCFFAVWFVVGNVWIFGGHSSANEAPNLYRLCIVFLAFSCIGYAMPFIFCSTICCCLPCIISILGVREDMSQNRGATSESINALPIYKFKMKKNKRNGNGNSAAAEGGVVAAGTEKEHVISGEDAVCCICLAKYENNDELRELPCSHLFHKDCVDKWLKINALCPLCKSDVGENLTGSVSGEDASQQQGESRVENGLTNTSV* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g1047 436 MobiDBLite consensus disorder prediction 37 103 - -
Gso14g1047 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 343 410 IPR013083 -
Gso14g1047 436 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 19 428 - -
Gso14g1047 436 MobiDBLite consensus disorder prediction 70 92 - -
Gso14g1047 436 MobiDBLite consensus disorder prediction 37 62 - -
Gso14g1047 436 ProSiteProfiles Zinc finger RING-type profile. 361 402 IPR001841 -
Gso14g1047 436 CDD RING-H2_RNF111_like 360 404 - -
Gso14g1047 436 MobiDBLite consensus disorder prediction 412 436 - -
Gso14g1047 436 SUPERFAMILY RING/U-box 353 408 - -
Gso14g1047 436 SMART ring_2 361 401 IPR001841 -
Gso14g1047 436 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 19 428 - -
Gso14g1047 436 Pfam Ring finger domain 361 402 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g1047 Gso-Chr14 17720209 17741618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g1047 16 412 C3H Transcription Factor Family AT1G80400 50.500 2.95e-139 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g1047 - - gmx:100778728 803.512