Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g1042 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGATGTTTATATCCATGATTACTTAGTGAAGAGGGATTTGAAAGCTTCAGCTCAGGCTTTTCAAGCTGAAGGGAAAGTGTCCTCGGACCCTGTTGCTATTGATGCCCCTGGAGGATTTCTGTTTGAGTGGTGGTCTGTTTTCTGGGACATATTTATTGCCAGGACTAATGAGAAGCACTCAGAGGTTGCTGCATCTTATATCGAGACCCAGTTAATTAAGGCGAGAGAGCAACAACAGCAGCAGCAGCAGCCACAACCTCAGCAGTCGCAACATCAACAACAGCAGCAGCAGCAACAACAGCAACAACAACAGCAACACATGCAGATGCAACAAATCCTTTTACAGAGGGCTCAGCAGCAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAACCACAACAGCAGCAGCTGCAGCAACCACAGCTGCAACATCAGCAGCAGCCACCACAGCAACAACAGGGTAGGGATAGGGCTCATCTCTTAAATGGTGGTACGAATGGGTTAGTTGGAAACCCTGGCACGGCAAATGCACTAGCAACAAAGATGTATGAGGAAAGGTTAAAATTGCCCCTTCAAAGGGACTCTTTGGAAGATGCAGCAATGAAGCAAAGATATGGAGACCAACTCTTAGACCCAAATCATGCCTCAATATTGAAGTCATCTGCAGCTACTGGCCAGCCTTCAGGGCAAGTTTTGCATGGTGCTGCTGGTGCAATGTCTTCACAAGTTCAAGCTCGTAGTCAGCAATTACCAGGATCTACTCCTGATATAAAGAGTGAGATCAATCCTGTTTTAAATCCCAGAGCTGCAGCTCCTGAAGGATCATTGATAGCAATGCCTGGTTCGAATCAAGGTAGCAATAATTTGACTCTGAAAGGGTGGCCGCTCACAGGCTTGGAGCAACTACGTTCTGGTCTACTCCAGCAACAAAAACCTCCTTTCATACAGTCTCCTCAGCCATTTCATCAACTTCCAATGTTGACACCACAGCATCAGCAACAACTAATGCTAGCACAACAAAATTTGGCATCTCCATCTGCAAGTGATGATAATAGAAGACTCAGAATGCTGCTGAATAATAGGAATATCGGTGTAACTAAGGATGGTCTTTCAAACCCTGTTGGTGATATAGTATCAAATCTTGGATCACCTCTTCAAGCAGGTGGCCCTGCTTTTCCACGTAGTGATACAGATATGCTAATGAAGTTGAAACTGGCGCAATTACAACATCAACAGCAGAATGCCAATCCACAACAGCAGCAACTGCAACAGCATACTCTTTCGAATCAGCAATCTCAGACTTCAAATCATAGCATGCATCAACAAGATAAAATGGGGGGAGGTGGTGGCAGTGTCAATGTGGATGGTAGCATGTCAAACTCCTTTAGAGGCAATGATCAGGTTTCCAAAAACCAGACTGGGAGAAAGAGAAAGCAGCCTGCATCTTCTGGTCCTGCCAATAGTTCTGGAACAGCTAATACAGCTGGTCCATCTCCAAGTTCAGCACCCTCAACTCCCTCAACACATACACCTGGTGATGTGATGTCAATGCCTGCTTTACCTCACAGTGGTAGTTCTTCAAAGCCATTAATGATGTTTAGTGCTGATGGCTCTGGAACTCTGACATCACCTTCAAACCAATTGTGGGATGATAAGGATCTTGAATTGCAGGCTGATGTGGACCGTTTTGTGGAGGATGGATCTCTTGATGATAATGTGGAGTCTTTTTTATCCCATGATGATACAGACCCTAGAGATACTGTTGGTCGTTGTATGGATGTAAGCAAAGGTTTCACATTTTCTGAAATAAATTCTGTACGTGCAAGCACTAACAAAGTTGTCTGTTGCCATTTCTCATCTGATGGGAAATTGCTTGCTAGCGGTGGCCATGACAAAAAGGCTGTTTTATGGTTCACAGATTCTCTAAAACAGAAAGCCACTCTTGAAGAGCATGCATATTTAATCACTGATGTCCGTTTCAGTCCAAGCATGCCTCGTCTTGCAACATCTTCATATGACAAAACTGTCAGGGTGTGGGATGTTGAAAATCCTGGATATTCGCTTCGTACCTTCACGGGACATTCTTCATCTGTTATGTCACTAGATTTTCACCCTAATAAAGATGATCTTATCTGCTCTTGTGATGTTGATGGTGAGATAAGATATTGGAGCATTAACAATGGCAGTTGTGCTAGAGTCTCAAAGGGTGGCACAGCTCAAATGAGATTTCAACCTCGTCTAGGGAGGTACCTAGCTGCAGCTGCAGAGAATGTTGTTTCTATACTTGATGTGGAAACTCAAGCATGTCGATATTCATTAAAAGGACATACAAAATCGATACATTCTGTGTGTTGGGATCCTTCTGGGGAGTTTCTGGCATCTGTAAGTGAGGACTCTGTCAGGGTTTGGACTCTTGGATCAGGGAGTGAAGGGGAGTGCGTTCATGAGCTTAGCTGTAATGGCAATAAGTTTCACTCGTGTGTTTTCCATCCAACATATTCTTCGCTGTTGGTCGTTGGTTGTTACCAGTCATTGGAGCTCTGGAACATGACTGAGAACAAGACGATGACTCTATCTGCTCATGAAGGTCTTATTGCGGCATTGGCGGTTTCTACTGTAAATGGTTTGGTTGCTTCAGCCAGTCATGACAAGTTTGTCAAGCTCTGGAAGTGA 2709 0.4448 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQPQPQQSQHQQQQQQQQQQQQQQHMQMQQILLQRAQQQQQQQQQQQQQQPQQQQLQQPQLQHQQQPPQQQQGRDRAHLLNGGTNGLVGNPGTANALATKMYEERLKLPLQRDSLEDAAMKQRYGDQLLDPNHASILKSSAATGQPSGQVLHGAAGAMSSQVQARSQQLPGSTPDIKSEINPVLNPRAAAPEGSLIAMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPPFIQSPQPFHQLPMLTPQHQQQLMLAQQNLASPSASDDNRRLRMLLNNRNIGVTKDGLSNPVGDIVSNLGSPLQAGGPAFPRSDTDMLMKLKLAQLQHQQQNANPQQQQLQQHTLSNQQSQTSNHSMHQQDKMGGGGGSVNVDGSMSNSFRGNDQVSKNQTGRKRKQPASSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVMSMPALPHSGSSSKPLMMFSADGSGTLTSPSNQLWDDKDLELQADVDRFVEDGSLDDNVESFLSHDDTDPRDTVGRCMDVSKGFTFSEINSVRASTNKVVCCHFSSDGKLLASGGHDKKAVLWFTDSLKQKATLEEHAYLITDVRFSPSMPRLATSSYDKTVRVWDVENPGYSLRTFTGHSSSVMSLDFHPNKDDLICSCDVDGEIRYWSINNGSCARVSKGGTAQMRFQPRLGRYLAAAAENVVSILDVETQACRYSLKGHTKSIHSVCWDPSGEFLASVSEDSVRVWTLGSGSEGECVHELSCNGNKFHSCVFHPTYSSLLVVGCYQSLELWNMTENKTMTLSAHEGLIAALAVSTVNGLVASASHDKFVKLWK* 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g1042 902 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 660 695 - -
Gso14g1042 902 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 870 902 - -
Gso14g1042 902 MobiDBLite consensus disorder prediction 421 454 - -
Gso14g1042 902 Pfam LisH 10 36 IPR006594 GO:0005515
Gso14g1042 902 ProSiteProfiles Trp-Asp (WD) repeats profile. 870 902 IPR001680 GO:0005515
Gso14g1042 902 MobiDBLite consensus disorder prediction 144 171 - -
Gso14g1042 902 MobiDBLite consensus disorder prediction 421 558 - -
Gso14g1042 902 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 703 741 - -
Gso14g1042 902 ProSiteProfiles Trp-Asp (WD) repeats profile. 785 825 IPR001680 GO:0005515
Gso14g1042 902 ProSiteProfiles Trp-Asp (WD) repeats profile. 703 745 IPR001680 GO:0005515
Gso14g1042 902 ProSiteProfiles Trp-Asp (WD) repeats profile. 618 649 IPR001680 GO:0005515
Gso14g1042 902 MobiDBLite consensus disorder prediction 532 558 - -
Gso14g1042 902 ProSiteProfiles Trp-Asp (WD) repeats profile. 660 695 IPR001680 GO:0005515
Gso14g1042 902 SMART Lish 8 40 IPR006594 GO:0005515
Gso14g1042 902 CDD WD40 614 902 - -
Gso14g1042 902 ProSitePatterns Trp-Asp (WD) repeats signature. 679 693 IPR019775 -
Gso14g1042 902 Pfam WD domain, G-beta repeat 865 902 IPR001680 GO:0005515
Gso14g1042 902 Pfam WD domain, G-beta repeat 781 815 IPR001680 GO:0005515
Gso14g1042 902 Pfam WD domain, G-beta repeat 619 649 IPR001680 GO:0005515
Gso14g1042 902 Pfam WD domain, G-beta repeat 699 736 IPR001680 GO:0005515
Gso14g1042 902 Pfam WD domain, G-beta repeat 658 692 IPR001680 GO:0005515
Gso14g1042 902 Coils Coil 119 142 - -
Gso14g1042 902 SUPERFAMILY WD40 repeat-like 612 902 IPR036322 GO:0005515
Gso14g1042 902 MobiDBLite consensus disorder prediction 144 185 - -
Gso14g1042 902 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 902 IPR044716 GO:0003714
Gso14g1042 902 Gene3D - 596 747 IPR015943 GO:0005515
Gso14g1042 902 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Gso14g1042 902 SMART WD40_4 863 902 IPR001680 GO:0005515
Gso14g1042 902 SMART WD40_4 696 736 IPR001680 GO:0005515
Gso14g1042 902 SMART WD40_4 611 650 IPR001680 GO:0005515
Gso14g1042 902 SMART WD40_4 653 692 IPR001680 GO:0005515
Gso14g1042 902 SMART WD40_4 822 861 IPR001680 GO:0005515
Gso14g1042 902 SMART WD40_4 778 816 IPR001680 GO:0005515
Gso14g1042 902 MobiDBLite consensus disorder prediction 465 524 - -
Gso14g1042 902 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 902 - -
Gso14g1042 902 Gene3D - 748 902 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g1042 Gso-Chr14 17291803 17307809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g1042 698 901 Miscellaneous Gene Families AT5G08390 25.837 9.91e-14 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Gso14g1042 WD40 0.081 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g1042 - - gmx:100779972 1387.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1042 14 17291803 17307809 Gso17g1744 17 33758477 33769871 GST
Gso14g1042 14 17291803 17307809 Gso4g0605 4 5844319 5854097 PCT
Gso14g1042 14 17291803 17307809 Gso6g0605 6 5593181 5606284 PCT
Gso4g0605 4 5844319 5854097 Gso14g1042 14 17291803 17307809 PCT
Gso6g0605 6 5593181 5606284 Gso14g1042 14 17291803 17307809 PCT