Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso14g0991 | ATGAACCCGCTAACACTAGTGAAGCGCACTCAGAACATCAATGCCAGAGAAGCTGCACTTGGCATCGGCGACCAAGCCTCCTGGCACACCAAGTACAAGGATTCCGCTTACGTCTTCGTCGGTGGCATCCCCTTCAATCTCACCGAGGGTGACCTCCTTGCCGTTTTTGCTAAATATGGAGAGGTTGTTGATGTTAACCTAGTTAGGGACAAAGGTACCGGAAAATCCAAGGGTTTTGCGTTCCTTGCGTATGAGGATCAGAGAAGCACGAATCTTGCTGTGGATAATTTGAACGGGGCACAGGTTTTGGGGAGAATTATTAGGGTGGACCATGTTGATAAGTATAAGAAGAAGGAGGAGGAGGATAAAGAGACAGAGCAGCAGAAGAGGGAGGCGCGTGGCGTTTGCCGTGCTTTCCAAAGAGGTGAATGCACTCAGGGAGCTAGCTGCAAGTTTTCTCATGATGAGCAAGCATGCCTTATTCATACACTCGCGGTTCTGCCATGGATGCGTCACCCTGTCGACATCACTCGCTGTCAAGAACTTCCTGTCTGTAGTGTTCCTTTGATGAAACGCAGGTTACAGTCGGTACTGGAGGAGAATATGGGAATCTCGAAGCTATTCCCGGTTCAGGTCGCACTTTGGCAAGAAACGGTTGGACCAGGTGACTTTGAGCGAGACCTTTGCATAAACTCGCCCACCGGAAGTGGCAAAACCTTGGCCTATGCTCTTCCCATCGTTCAAAACTTGTCCACCGACACCGGTGGCCGCCTCCGTGCTTTGATTGTAGTTCCCACTCGCGACCTTGCTTTGCAGGTTAAGTGCGTCTTCGACACCCTTGCATCACCGCTGGGTCTCCGTATTGGCTTGGCTGCTGGTCAATCTTCACTTCGCCACGAGCTTTCTAGCCTCATTTATCTACCTGGAGAAGACGACGGTCCAGATCCTGGGTTTTTGTCTCCGTTGTGGTTCCAAAGCAAGGTCGACATATTGGTAGCGACCCCTGGAAGGCTAGTGGACCATGTCAACAAGTTGTCGTTGAAGCATCTTCGTTATCTCGTGGTTGACGAAGCCGATCGATTGCTACGCGAGGACTACCAGTCCTGGTTACCTACTGTGCTTAAATTAACTCAGTCTAGGCTGGCAAAGATAGTTTTATCTGCTACATTAACTCGGGACCCAGGAAGGCTTGCTCAACTTAATTTGCATCACCCTTTATTCCTGAGTGCTGGGAAAATGCGTTATCGGCTCCCAGAATATTTGGAATGTTACAAACTGATCTGTGAAAGAAAGGTCAAACCCTTGTATTTGGTTGCCCTTTTGAAATCCCTAGGAGAAGAAAAATGCATAGTTTTCACAAGATCTGTGGAATCAACACATCATCTCTGCAAATTGCTAAATTGTTTTGGTGATCTGAAAATTGGTATCAAGGAGTTTTCTGGTCTAAAACATCAACGGGTAAGAAGCAAGACAGTGGGTGAATTTCGGAGAGGGGAGTTTCAAGTGCTTGTATCTTCTGATGCAATGACTCGTGGAATGGATGTTGAAGGGGTAAGAAATGTCATTAATTATGACATGCCCAAATACACAAAGACGTATGTTCATCGAGCTGGTAGAACTGCAAGAGCTGGCCAGACTGGGCGTTGCTTCACATTGATGTCAAAAGATGAGGTTGGAGGATTTGAGAAGTTGATGAAAAAGGCGGAGGCCAGTGATTGTTATGAGCATACTGTTCCATCCAGTTTGATTGAAGCGCTTCATAGTACCTACCAATCAGCACTGACAAAATTGAAGGAGAAAATTCTGGAGGCCCGGAGGAAACCAAGGATAAGTCTTGTCAATCGATCAGAGTGA | 1854 | 0.473 | MNPLTLVKRTQNINAREAALGIGDQASWHTKYKDSAYVFVGGIPFNLTEGDLLAVFAKYGEVVDVNLVRDKGTGKSKGFAFLAYEDQRSTNLAVDNLNGAQVLGRIIRVDHVDKYKKKEEEDKETEQQKREARGVCRAFQRGECTQGASCKFSHDEQACLIHTLAVLPWMRHPVDITRCQELPVCSVPLMKRRLQSVLEENMGISKLFPVQVALWQETVGPGDFERDLCINSPTGSGKTLAYALPIVQNLSTDTGGRLRALIVVPTRDLALQVKCVFDTLASPLGLRIGLAAGQSSLRHELSSLIYLPGEDDGPDPGFLSPLWFQSKVDILVATPGRLVDHVNKLSLKHLRYLVVDEADRLLREDYQSWLPTVLKLTQSRLAKIVLSATLTRDPGRLAQLNLHHPLFLSAGKMRYRLPEYLECYKLICERKVKPLYLVALLKSLGEEKCIVFTRSVESTHHLCKLLNCFGDLKIGIKEFSGLKHQRVRSKTVGEFRRGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYTKTYVHRAGRTARAGQTGRCFTLMSKDEVGGFEKLMKKAEASDCYEHTVPSSLIEALHSTYQSALTKLKEKILEARRKPRISLVNRSE* | 618 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso14g0991 | 617 | SMART | c3hfinal6 | 132 | 156 | IPR000571 | GO:0046872 | |
Gso14g0991 | 617 | Pfam | DEAD/DEAH box helicase | 211 | 394 | IPR011545 | GO:0003676|GO:0005524 | |
Gso14g0991 | 617 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 36 | 114 | IPR000504 | GO:0003723 | |
Gso14g0991 | 617 | SMART | ultradead3 | 203 | 420 | IPR014001 | - | |
Gso14g0991 | 617 | Pfam | Helicase conserved C-terminal domain | 433 | 544 | IPR001650 | - | |
Gso14g0991 | 617 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 354 | 362 | IPR000629 | - | |
Gso14g0991 | 617 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 436 | 586 | IPR001650 | - | |
Gso14g0991 | 617 | SMART | helicmild6 | 460 | 544 | IPR001650 | - | |
Gso14g0991 | 617 | CDD | SF2_C_DEAD | 421 | 552 | - | - | |
Gso14g0991 | 617 | CDD | RRM_ist3_like | 27 | 113 | IPR045844 | GO:0000398|GO:0003723 | |
Gso14g0991 | 617 | Gene3D | - | 129 | 188 | - | - | |
Gso14g0991 | 617 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 38 | 107 | IPR000504 | GO:0003723 | |
Gso14g0991 | 617 | PANTHER | RNA HELICASE | 118 | 589 | - | - | |
Gso14g0991 | 617 | ProSiteProfiles | Zinc finger C3H1-type profile. | 130 | 157 | IPR000571 | GO:0046872 | |
Gso14g0991 | 617 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 135 | 155 | IPR000571 | GO:0046872 | |
Gso14g0991 | 617 | Gene3D | - | 8 | 128 | IPR012677 | - | |
Gso14g0991 | 617 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 258 | 563 | IPR027417 | - | |
Gso14g0991 | 617 | PANTHER | ATP-DEPENDENT RNA HELICASE DDX51 | 118 | 589 | - | - | |
Gso14g0991 | 617 | SUPERFAMILY | RNA-binding domain, RBD | 25 | 116 | IPR035979 | GO:0003676 | |
Gso14g0991 | 617 | Coils | Coil | 115 | 135 | - | - | |
Gso14g0991 | 617 | Gene3D | - | 189 | 413 | IPR027417 | - | |
Gso14g0991 | 617 | Gene3D | - | 425 | 614 | IPR027417 | - | |
Gso14g0991 | 617 | SUPERFAMILY | CCCH zinc finger | 133 | 155 | IPR036855 | GO:0046872 | |
Gso14g0991 | 617 | CDD | DEADc_DDX51 | 190 | 409 | - | - | |
Gso14g0991 | 617 | Coils | Coil | 587 | 607 | - | - | |
Gso14g0991 | 617 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 219 | 408 | IPR014001 | - | |
Gso14g0991 | 617 | SMART | rrm1_1 | 37 | 110 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso14g0991 | Gso-Chr14 | 14064182 | 14075021 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso14g0991 | 227 | 557 | Eukaryotic Initiation Factors Gene Family | AT1G72730 | 25.225 | 2.43e-29 | 119 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso14g0991 | K14807 | - | gmx:100789424 | 1158.67 |