Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g0975 ATGGCGTACCATAACCACAACCTTTCACAGCAAGACCTTCCACTCCACCATTTCCCGAACCAATCCATATTACCAGACCAACAACAACAACTTCCTTCCTCACCCGAACCAAACTCCAAACCTCCCTCCGATCTCCAAACCGCGCCCAATTGGCTCAACGACGCGCTTCTCCGCACTCACTACACCGAGACCACCACCAACGACGCCACAACCAACACCGCCACCGTCGCCGCCGCTGCCGCCAACAGTAATGTTAACGGTTCCAATTTCCTGAACCTCAACCCCGGTGCCTCCGACGCGCAGTGGCCGGCGCTCCACCGCCACCCTGGCGAGGTCATCGACGCCGGCGCAGGGGACTCCATGGTGGAGCACGCCGATTTGAAGGGCGGCGGCGGAGACGGTGGTGGCGACGCCGTGAATTGGCAGATTGGACGGTGGAAGGCGGAGATTCTGCAGCACCCGCTGTACGAGCAGCTGCTGTCGGCGCACGTGTCGTGCCTCCGGATCGCCACGCCGGTGGACCAGCTGCCGAGGATCGACGCGCAGCTGGCGCAGTCGCAGAATGTGGTCGCGAAATACGCAGCTTTCGGACACAACAACATCGTCGCCGATGACAAAGAACTCGATCAGTTCATGTCGCACTATGTTTTGTTGCTCTGTTCCTTCAAAGAACAATTGCAGCAGCATGTCCGGGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGATATAGAGCAATCATTGCAGAGTCTAACAGGAGTTTCACCTGGAGAAGGTACAGGGGCAACAATGTCTGATGATGAAGATGACCAAGTAGATAGTGATGCCAATCTCTTTGATAGTAGTTTCGATGGGGCAGATGGCATGGGGTTTGGCCCTCTTGTTCCTACAGAGAGCGAGAGGTCCCTCATGGAGCGAGTAAGACAAGAATTAAAGCATGAACTGAAACAGGGTTATAAGGAGAAAATTGTAGATATAAGAGAGGAAATCTTGCGCAAGAGAAGAGCTGGGAAACTTCCTGGTGACACAACTTCTGTTCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTACCCTACCGAGGAGGATAAGGCAAGGTTGGTGCAGGAAACTGGATTGCAATTAAAGCAGATTAATAATTGGTTTATCAATCAAAGGAAGAGGAATTGGCACAGCAATCCTTCAACTTCAACTGTCTTGAAGAGCAAACGCAAAAGAAGCAATGCAGGTGATAACTGA 1242 0.525 MAYHNHNLSQQDLPLHHFPNQSILPDQQQQLPSSPEPNSKPPSDLQTAPNWLNDALLRTHYTETTTNDATTNTATVAAAAANSNVNGSNFLNLNPGASDAQWPALHRHPGEVIDAGAGDSMVEHADLKGGGGDGGGDAVNWQIGRWKAEILQHPLYEQLLSAHVSCLRIATPVDQLPRIDAQLAQSQNVVAKYAAFGHNNIVADDKELDQFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWDIEQSLQSLTGVSPGEGTGATMSDDEDDQVDSDANLFDSSFDGADGMGFGPLVPTESERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKRSNAGDN* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g0975 413 CDD homeodomain 333 394 IPR001356 GO:0003677
Gso14g0975 413 MobiDBLite consensus disorder prediction 1 20 - -
Gso14g0975 413 MobiDBLite consensus disorder prediction 393 413 - -
Gso14g0975 413 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 36 409 - -
Gso14g0975 413 SMART HOX_1 332 397 IPR001356 GO:0003677
Gso14g0975 413 SMART KNOX1_2 144 188 IPR005540 GO:0003677|GO:0005634
Gso14g0975 413 Pfam KNOX1 domain 147 187 IPR005540 GO:0003677|GO:0005634
Gso14g0975 413 SMART ELK_2 310 331 IPR005539 GO:0003677
Gso14g0975 413 Pfam KNOX2 domain 203 252 IPR005541 GO:0003677|GO:0005634
Gso14g0975 413 Pfam ELK domain 310 331 IPR005539 GO:0003677
Gso14g0975 413 ProSiteProfiles 'Homeobox' domain profile. 330 393 IPR001356 GO:0003677
Gso14g0975 413 MobiDBLite consensus disorder prediction 25 48 - -
Gso14g0975 413 ProSiteProfiles ELK domain profile. 310 330 IPR005539 GO:0003677
Gso14g0975 413 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 36 409 - -
Gso14g0975 413 SMART KNOX2_2 198 253 IPR005541 GO:0003677|GO:0005634
Gso14g0975 413 Pfam Homeobox KN domain 350 389 IPR008422 GO:0003677|GO:0006355
Gso14g0975 413 SUPERFAMILY Homeodomain-like 332 395 IPR009057 -
Gso14g0975 413 Gene3D - 331 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g0975 Gso-Chr14 13467823 13472542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g0975 1 407 Homeobox Transcription Factor Family AT5G25220 63.656 0.0 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gso14g0975 KNOX2 5.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g0975 - - gmx:100812596 774.622