Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g0872 ATGGAGGCAGGTTACAATCCTCGTACCGTCGAAGAGGTCTTTAGGGATTTCAAGGGTCGCAGAGCTGCTTTGATTAAAGCCCTCACCACCGATGTTGAAGAGTTCTACCAGCAGTGCGATCCCGAGAAGGAAAATCTTTGCCTTTATGGATTTCCAAGTGAGCAGTGGGAAGTCAATCTGCCAGCTGAGGAGGTGCCCCCTGAGCTTCCAGAGCCAGCATTGGGCATTAACTTTGCCAGAGACGGGATGCAAGAAAAGGACTGGCTGTCTTTGGTTGCTGTACACAGTGATGCTTGGTTGCTTGCTGTGGCTTTTTATTTTGGTGCTAGGTTTGGATTTGACAAGGCTGATAGGAAGCGACTATTTAATATGATAAATGATCTTCCGACAATATTTGAGGTTGTTACAGGGATGGCCAAGAAACAAGGAAAGGAAAAGTCATCAGTTTCAAATCATAGCAGTACCAAATCTAAGTCAAACTCTAAGCGAGGTTCTGAATCAAAGTATACAAAAGCAATGCAATCAAAGGACGAGGATGATGAGGGTGGTGCGGGTTTGGGTTTGGGTTTGGAAGACGAAGACGAAGAGGAACATGGAGATACCTTGTGTGGGGCATGTGGAGAGAGCTATGCTGCTGATGAGTTCTGGATTTGCTGCGACATCTGCGAGAAATGGTTCCATGGAAAGTGCGTGAAGATTACCCCTGCAAGGGCTGAGCATATCAAGCAGTACAAATGTCCTTCTTGCAGCAACAAGCGAGCTCGACCTTGA 771 0.4669 MEAGYNPRTVEEVFRDFKGRRAALIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFNMINDLPTIFEVVTGMAKKQGKEKSSVSNHSSTKSKSNSKRGSESKYTKAMQSKDEDDEGGAGLGLGLEDEDEEEHGDTLCGACGESYAADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g0872 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 192 251 IPR013083 -
Gso14g0872 256 CDD PHD_AL_plant 202 252 IPR044104 -
Gso14g0872 256 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 4 256 - -
Gso14g0872 256 SMART PHD_3 202 250 IPR001965 -
Gso14g0872 256 MobiDBLite consensus disorder prediction 159 183 - -
Gso14g0872 256 PANTHER CPG BINDING PROTEIN 4 256 IPR045104 GO:0006355|GO:0042393
Gso14g0872 256 ProSiteProfiles Zinc finger PHD-type profile. 200 252 IPR019787 -
Gso14g0872 256 SUPERFAMILY FYVE/PHD zinc finger 192 253 IPR011011 -
Gso14g0872 256 Pfam Alfin 9 137 IPR021998 GO:0006355|GO:0042393
Gso14g0872 256 MobiDBLite consensus disorder prediction 143 191 - -
Gso14g0872 256 ProSitePatterns Zinc finger PHD-type signature. 203 249 IPR019786 -
Gso14g0872 256 Pfam PHD-finger 203 252 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g0872 Gso-Chr14 10084792 10090042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g0872 1 255 Alfin-like Transcription Factor Family AT3G42790 75.676 1.62e-127 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Gso14g0872 Alfin 1.7e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g0872 - - gmx:100797908 469.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0872 14 10084792 10090042 Gso14g0872 14 10084792 10090042 ECH
Gso17g0431 17 3916809 3920756 Gso14g0872 14 10084792 10090042 ECH
Gso14g0872 14 10084792 10090042 Gso17g1909 17 37990056 37995096 GST