Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g0845 ATGTCCAATTTGACGTCTGCATCCAGTGAAATAAGTGCTTCTTCAGGAATCAGGAATGACAACGGTTCTTCTCTCTATGCTCAATATTCCTCTACTTCAATAAGTCAAGAACCACAACCTAAAAAGAAGCGAAGTCTTCCAGGTCACCCAGACCCTGAGGCAGAAGTGATAGCATTGACTCCGCGGACCCTTTTGGCAACAAACAGGTTCGTTTGTGAGATATGTCACAAAGGGTTTCAGAGAGACCAGAACTTGCAGCTTCATAGAAGAGGGCACAATTTGCCATGGAAGCTGAAGAAAAAGAGCAGCAAAGACGACGTGAGAAAGAAAGTGTATGTGTGCCCAGAGGCAACATGCGTTCACCATGACCCTTCAAGGGCCCTTGGGGACCTCACTGGAATCAAGAAGCACTTTTTCAGGAAACACGGAGAGAAGAAATGGAGGTGTGAGAAGTGCTCCAAACTCTACGCGGTTCAATCAGATTGGAAAGCCCACTCCAAAATCTGTGGCACCAAAGAATATAAATGCGACTGTGGTACCCTTTTCTCTAGGAGGGACAGCTTTATCACTCACAGAGCCTTCTGTGATGCCTTAGCACAGGAAAGTAGTAGAGTAGTGAACCCTCACCCTCTTCTATCAACTCAATTTCGTAGTCATGGCCTTCAGCTTCAAGCACCATCACTTCTGAAAAGAGAACATGATCACTTCAACTTATTAACCTCAGAAATTCCATCATGGTTAACTTCTCCAACAGTGGTAGAAGAAGCAATATTGCTAAACAATCAAACCATAAGAACCACCTCAGATTACTTCTCCAAACCACAGTTATTCCCAACAGCACATGTCAACAATAACCACTCCTTACTCCATGATCAAAACCCTAACCCTAATACTACTACAACAACCACTTTTCTTTCTTCTTTGAGTTCCTTCCCTAATTATTCCACTTCTTCTTCTTCTTCTCCTCACATGTCAGCGGCTTTGTTGCAAAAAGCCTCACAAATAGGCGAAACAGTGAGCAGTGCACCTTCACAAGCGATGCTGGTTAGACCCCACTTGTTACTGCAGCAGCAGGTTCACGTGCCCGAATGTACAACAACAACAGCAATTGCAACAACAGGGTATAATATCAATATGGCTTCATCTTCAGCCGTTTCTGGAATGGTTATTATGCCTTCACGTGAAGAAATAGGGGCTCTTGGGTTTGCTAGTGGCATGGCATCTTGA 1227 0.4417 MSNLTSASSEISASSGIRNDNGSSLYAQYSSTSISQEPQPKKKRSLPGHPDPEAEVIALTPRTLLATNRFVCEICHKGFQRDQNLQLHRRGHNLPWKLKKKSSKDDVRKKVYVCPEATCVHHDPSRALGDLTGIKKHFFRKHGEKKWRCEKCSKLYAVQSDWKAHSKICGTKEYKCDCGTLFSRRDSFITHRAFCDALAQESSRVVNPHPLLSTQFRSHGLQLQAPSLLKREHDHFNLLTSEIPSWLTSPTVVEEAILLNNQTIRTTSDYFSKPQLFPTAHVNNNHSLLHDQNPNPNTTTTTTFLSSLSSFPNYSTSSSSSPHMSAALLQKASQIGETVSSAPSQAMLVRPHLLLQQQVHVPECTTTTAIATTGYNINMASSSAVSGMVIMPSREEIGALGFASGMAS* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g0845 408 MobiDBLite consensus disorder prediction 1 40 - -
Gso14g0845 408 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Gso14g0845 408 Gene3D Classic Zinc Finger 70 110 - -
Gso14g0845 408 SMART c2h2final6 147 167 IPR013087 -
Gso14g0845 408 SMART c2h2final6 112 142 IPR013087 -
Gso14g0845 408 SMART c2h2final6 70 92 IPR013087 -
Gso14g0845 408 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 3 368 - -
Gso14g0845 408 SUPERFAMILY beta-beta-alpha zinc fingers 69 167 IPR036236 -
Gso14g0845 408 MobiDBLite consensus disorder prediction 1 53 - -
Gso14g0845 408 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 3 368 - -
Gso14g0845 408 Gene3D Classic Zinc Finger 111 195 - -
Gso14g0845 408 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 92 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g0845 Gso-Chr14 9305408 9309776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g0845 1 212 IDZ Gene Family AT1G55110 72.897 5.59e-114 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso14g0845 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g0845 K25870 - gmx:100783557 748.429
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0845 14 9305408 9309776 Gso17g1933 17 38462660 38467390 GST