Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g0779 ATGATACTAGAAGAAGGGTGTGCAAAAATGCAATTTTTTCAGCCATCTAAGGAGAGAGAAGATGAGAATGCGAAGATTGAAGAAGCTGGTGTGGATCTGAAGGTGATGATTGAGGAAATGGAATCCATTGATGTGCCTTCAGTGTTCATCTGCCCAATCTCCCTTGAACCAATGCAAGACCCTGTGACCCTTTGCACTGGTCAAACCTACGACAGATCCAACATCCTCAAATGGTTCTCACTTGGCCACAAAACATGTCCCACAACAATGCAAGAGCTTTGGGACGATGTTGTCACTCCCAATAGCACCCTCTCCCACTTGATGCTCACTTGGTTCTCTCAAAAGTACTTGGCCTTGAAGAAGAAGCTCAAGGATGTTCAAGGAAGAGCCTTGGAAATCTTGAACATGCTCAAGAAGGTAAAGGGTCAAGCTAGAGTTCGAGCACTTCAAGATCTAAGGCAACTTGTGGCTTCTCATGTCAATGCAAGGAAGGCACTTGAGGAAAATGGTGGGGTTGCTTTGGTTTTCAATTTTTTGGGTCCTTTCACTTCCCATGCTGTTGGGTCAGAAGCTATTGGGATCATAGTGTGTTTGGATTTGAGTTCTGAAGTGAAGAGAAGTCTCATGCATCCTGCTAAGGTGTCATTGTTGGTGGATATCATGAATGAGGGAACCATTGAGACCAAAATGAACTGTGCCAAGTTGATTGAGATGTTGTTGGTGGAAGGGAACAATGAGACTGTTTCAAGTTTGAGTCTTTTAGTTGGGTTGTTGAGGCTAGTGAGGGATAAGAAACACCCAAATGGGGTGGTCTCAATTGGTCTCATACTACTCAAGAAGGCTATAATATGTTCCCATGAATCAGTTAGAAGCTCTTTGATAAGCCTAGGAGCAATTCCTCTATTGATTGAGCTTTTGCCTAGTTTGAACAATGAGTGTTTGGAGAAAGCACTCTACATACTTGAGGTGTTGTCAACACTTCCAGAGGGAAGAATGGCTTTGAAGGAGTGTCCAAATATCATTCCCAATGTGGTGAAGTTGCTGATGAGAGTCTCAGAGAGGTGCACACAATTTGCATTGTCAATATTGTGGGCTATTTACAAGCTTGCCCCTGAAGAGTGTGCCTCCAAGGCTGTGGAGGCTGGATTGGCAGCAAAGCTTCTGTTGGTGATTCAGAGTGGCTGCAACCCTGTGTTGAAGCAAATGTCTTCTGAGTTTTTGAAAATGTGCAGTCTGAATTACTCAACTAGCATCTTGGTTTCCAAGTGTATGCTCACCACAACAATACAATGA 1293 0.4362 MILEEGCAKMQFFQPSKEREDENAKIEEAGVDLKVMIEEMESIDVPSVFICPISLEPMQDPVTLCTGQTYDRSNILKWFSLGHKTCPTTMQELWDDVVTPNSTLSHLMLTWFSQKYLALKKKLKDVQGRALEILNMLKKVKGQARVRALQDLRQLVASHVNARKALEENGGVALVFNFLGPFTSHAVGSEAIGIIVCLDLSSEVKRSLMHPAKVSLLVDIMNEGTIETKMNCAKLIEMLLVEGNNETVSSLSLLVGLLRLVRDKKHPNGVVSIGLILLKKAIICSHESVRSSLISLGAIPLLIELLPSLNNECLEKALYILEVLSTLPEGRMALKECPNIIPNVVKLLMRVSERCTQFALSILWAIYKLAPEECASKAVEAGLAAKLLLVIQSGCNPVLKQMSSEFLKMCSLNYSTSILVSKCMLTTTIQ* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g0779 430 SUPERFAMILY ARM repeat 254 413 IPR016024 -
Gso14g0779 430 CDD RING-Ubox_PUB 49 91 IPR045210 -
Gso14g0779 430 Pfam U-box domain 45 115 IPR003613 GO:0004842|GO:0016567
Gso14g0779 430 Gene3D - 262 424 IPR011989 -
Gso14g0779 430 SUPERFAMILY RING/U-box 39 115 - -
Gso14g0779 430 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 127 IPR013083 -
Gso14g0779 430 ProSiteProfiles U-box domain profile. 44 118 IPR003613 GO:0004842|GO:0016567
Gso14g0779 430 SMART Ubox_2 48 111 IPR003613 GO:0004842|GO:0016567
Gso14g0779 430 PANTHER WDSAM1 PROTEIN 25 429 IPR045185 GO:0061630
Gso14g0779 430 SUPERFAMILY ARM repeat 133 246 IPR016024 -
Gso14g0779 430 Gene3D - 130 261 IPR011989 -
Gso14g0779 430 Coils Coil 149 169 - -
Gso14g0779 430 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 25 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g0779 Gso-Chr14 8239036 8240580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g0779 31 430 U-box Gene Family AT3G49810 63.682 0.0 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g0779 - - gmx:100803878 827.009