Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g0600 ATGGGAATTCAGGAGAGAAAGAAGGTGAAGAAACCTGCACAAGCCAGTTCCAGAAAGGGGTGTATGAGAGGCAAAGGTGGCCCTGAGAATGCTAAATGCACCTACAAAGGTGTGAGGCAAAGAACCTGGGGAAAATGGGTTGCTGAAATCCGTGAACCAAATCGTGGTGCAAGGCTCTGGCTTGGAACCTTTGACACCGCTCGTGAGGCTGCTTTGGCCTATGATGCTGCAGCCAGAAAGCTTTATGGACCTGATGCAAAACTCAACCTCGCAGAACTCTCTGTGCCTGCTCCTGCTCTTGCTGCAGTGAATCCTTCTCACATGCAACAACAACCTCAGGTTGTTCCCGAAATGCTGATACAACAGCAGCAGCCTCTTGTTCACCCTACCTTTGACCTTGTCAATGTCACTTCTCATCCTTCCGGTTTCAACAACATCCTCAACAACAACCCTGTGGTGGTCTCTTCCATGGCTTCTTCTTTTCTTGCAGATGCAGCAGTGCCAGTGTACACCAGCTGCGACTCTATTCTCTCTCTTCCGTCTGCAACAACCAACTACACCAACACCAACACAGTTCCAATGGAAATGGAAAATTACTCCTCCTCCATCCCTACTGTGGAGAGCAACGGGGACAACATGTTTCGTTCCTTCTGGGGGCCAACAATGGACGACACCATGCCTGTGTTTGATCAATCGATTTGGACCGAAGCTGCTATGTCTCTTGATCTTCCTATTATTGCAGATAATGGATTTTATGGAAGAGGAGTCGGCGGAAACAAAGGAGGCGGAAACTTCTTCCTTGACGAAGTTGCTGCTTGGGACTCCCTCCATACTCCTTCTTGCTGCATGTAA 852 0.4883 MGIQERKKVKKPAQASSRKGCMRGKGGPENAKCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTAREAALAYDAAARKLYGPDAKLNLAELSVPAPALAAVNPSHMQQQPQVVPEMLIQQQQPLVHPTFDLVNVTSHPSGFNNILNNNPVVVSSMASSFLADAAVPVYTSCDSILSLPSATTNYTNTNTVPMEMENYSSSIPTVESNGDNMFRSFWGPTMDDTMPVFDQSIWTEAAMSLDLPIIADNGFYGRGVGGNKGGGNFFLDEVAAWDSLHTPSCCM* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g0600 283 CDD AP2 33 93 IPR001471 GO:0003700|GO:0006355
Gso14g0600 283 Pfam AP2 domain 34 83 IPR001471 GO:0003700|GO:0006355
Gso14g0600 283 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Gso14g0600 283 Gene3D AP2/ERF domain 34 92 IPR036955 GO:0003700|GO:0006355
Gso14g0600 283 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Gso14g0600 283 PRINTS Ethylene responsive element binding protein signature 57 73 IPR001471 GO:0003700|GO:0006355
Gso14g0600 283 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 5 281 - -
Gso14g0600 283 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Gso14g0600 283 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 281 - -
Gso14g0600 283 SUPERFAMILY DNA-binding domain 34 90 IPR016177 GO:0003677
Gso14g0600 283 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g0600 Gso-Chr14 5877683 5878999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g0600 8 102 AP2-EREBP Transcription Factor Family AT1G75490 78.947 1.78e-49 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso14g0600 AP2 1.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g0600 - - gmx:100794497 553.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0600 14 5877683 5878999 Gso17g2155 17 41200779 41201969 GST
Gso14g0600 14 5877683 5878999 Gso4g0247 4 2293225 2294534 PCT
Gso14g0600 14 5877683 5878999 Gso6g0228 6 2204438 2205814 PCT
Gso4g0247 4 2293225 2294534 Gso14g0600 14 5877683 5878999 PCT
Gso6g0228 6 2204438 2205814 Gso14g0600 14 5877683 5878999 PCT